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AGMAT agmatinase [ Bos taurus (cattle) ]

Gene ID: 514509, updated on 5-Mar-2024

Summary

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Official Symbol
AGMATprovided by VGNC
Official Full Name
agmatinaseprovided by VGNC
Primary source
VGNC:VGNC:25730
See related
BGD:BT22986; Ensembl:ENSBTAG00000002478
Gene type
protein coding
RefSeq status
MODEL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (51918775..51960466)

Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112441770 Neighboring gene pleckstrin homology and RUN domain containing M2 Neighboring gene U6 spliceosomal RNA Neighboring gene DNA damage inducible 1 homolog 2 Neighboring gene DnaJ heat shock protein family (Hsp40) member C16 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene caspase 9 Neighboring gene chymotrypsin-like elastase family, member 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables agmatinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in putrescine biosynthetic process from arginine, using agmatinase IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agmatinase, mitochondrial; guanidino acid hydrolase, mitochondrial
Names
agmatine ureohydrolase (agmatinase)
XP_002694189.1
XP_010811754.1
XP_059731580.1
XP_059731581.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    51918775..51960466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010813452.4 → XP_010811754.1  guanidino acid hydrolase, mitochondrial isoform X3

    See identical proteins and their annotated locations for XP_010811754.1

    Conserved Domains (1) summary
    cd11592
    Location:17 → 309
    Agmatinase_PAH; Agmatinase-like family includes proclavaminic acid amidinohydrolase

  2. XM_059875598.1 → XP_059731581.1  guanidino acid hydrolase, mitochondrial isoform X4

  3. XM_059875597.1 → XP_059731580.1  guanidino acid hydrolase, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A3Q1N858
    Related
    ENSBTAP00000067134.1, ENSBTAT00000085149.2

  4. XM_002694143.7 → XP_002694189.1  guanidino acid hydrolase, mitochondrial isoform X2

    See identical proteins and their annotated locations for XP_002694189.1

    UniProtKB/TrEMBL
    E1BLC0
    Related
    ENSBTAP00000042200.2, ENSBTAT00000044729.4
    Conserved Domains (1) summary
    cd11592
    Location:64 → 352
    Agmatinase_PAH; Agmatinase-like family includes proclavaminic acid amidinohydrolase
Nucleotide Protein Strain
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