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GPN3 GPN-loop GTPase 3 [ Bos taurus (cattle) ]

Gene ID: 506597, updated on 4-Apr-2024

Summary

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Official Symbol
GPN3provided by VGNC
Official Full Name
GPN-loop GTPase 3provided by VGNC
Primary source
VGNC:VGNC:29540
See related
BGD:BT16347; Ensembl:ENSBTAG00000005347
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Also known as
ATPBD1C
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (54336988..54359821, complement)

Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 Neighboring gene anaphase promoting complex subunit 7 Neighboring gene microRNA mir-2285an Neighboring gene actin related protein 2/3 complex subunit 3 Neighboring gene family with sequence similarity 216 member A Neighboring gene VPS29 retromer complex component

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC142332

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GPN-loop GTPase 3
Names
ATP binding domain 1 family, member C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001075272.2 → NP_001068740.1  GPN-loop GTPase 3

    See identical proteins and their annotated locations for NP_001068740.1

    Status: PROVISIONAL

    Source sequence(s)
    BC120171
    UniProtKB/Swiss-Prot
    Q0P5E2
    Related
    ENSBTAP00000007032.5, ENSBTAT00000007032.6
    Conserved Domains (2) summary
    COG1100
    Location:1 → 206
    Gem1; GTPase SAR1 family domain [General function prediction only]
    pfam03029
    Location:8 → 254
    ATP_bind_1; Conserved hypothetical ATP binding protein

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    54336988..54359821 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005217762.5 → XP_005217819.1  GPN-loop GTPase 3 isoform X1

    Related
    ENSBTAP00000100985.1, ENSBTAT00000097505.1
    Conserved Domains (2) summary
    COG1100
    Location:1 → 206
    Gem1; GTPase SAR1 family domain [General function prediction only]
    pfam03029
    Location:8 → 254
    ATP_bind_1; Conserved hypothetical ATP binding protein

  2. XM_005217763.5 → XP_005217820.1  GPN-loop GTPase 3 isoform X2

    Related
    ENSBTAP00000084992.1, ENSBTAT00000105238.1
    Conserved Domains (2) summary
    COG1100
    Location:9 → 184
    Gem1; GTPase SAR1 family domain [General function prediction only]
    pfam03029
    Location:1 → 232
    ATP_bind_1; Conserved hypothetical ATP binding protein

RNA

  1. XR_009490947.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0P5E2.1 GenPept UniProtKB/Swiss-Prot:Q0P5E2

Gene LinkOut

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