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AHCTF1 AT-hook containing transcription factor 1 [ Bos taurus (cattle) ]

Gene ID: 504716, updated on 3-Apr-2024

Summary

Official Symbol
AHCTF1provided by VGNC
Official Full Name
AT-hook containing transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:25749
See related
BGD:BT22284; Ensembl:ENSBTAG00000013949
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

Location:
chromosome: 16
Exon count:
39
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 16 NC_037343.1 (30410239..30506676)

Chromosome 16 - NC_037343.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112441825 Neighboring gene 26S proteasome regulatory subunit 10B-like Neighboring gene small nucleolar RNA SNORA5 Neighboring gene kinesin family member 28 Neighboring gene saccharopine dehydrogenase (putative) Neighboring gene uncharacterized LOC132342451

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037343.1 Chromosome 16 Reference ARS-UCD2.0 Primary Assembly

Pathways from PubChem

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001192036.2NP_001178965.2  protein ELYS

    Status: PROVISIONAL

    Source sequence(s)
    NKLS02000016
    UniProtKB/TrEMBL
    F1MNL8

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037343.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    30410239..30506676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059875268.1XP_059731251.1  protein ELYS isoform X1

  2. XM_005216798.5XP_005216855.2  protein ELYS isoform X1

    UniProtKB/TrEMBL
    F1MNL8
    Related
    ENSBTAP00000073178.2, ENSBTAT00000077376.2
    Conserved Domains (3) summary
    pfam07964
    Location:16772084
    Red1; Rec10 / Red1
    pfam13934
    Location:724945
    ELYS; Nuclear pore complex assembly
    pfam16687
    Location:2488
    ELYS-bb; beta-propeller of ELYS nucleoporin
  3. XM_059875267.1XP_059731250.1  protein ELYS isoform X3

  4. XM_059875265.1XP_059731248.1  protein ELYS isoform X1

  5. XM_059875266.1XP_059731249.1  protein ELYS isoform X2

RNA

  1. XR_009490747.1 RNA Sequence