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arfip1 ADP ribosylation factor interacting protein 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496949, updated on 25-Apr-2024

Summary

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Official Symbol
arfip1provided by Xenbase
Official Full Name
ADP ribosylation factor interacting protein 1provided by Xenbase
Primary source
Xenbase:XB-GENE-951005
See related
Ensembl:ENSXETG00000001840
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (55315156..55389127, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (46086658..46162260, complement)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene tripartite motif containing 2 Neighboring gene uncharacterized LOC105946244 Neighboring gene FH2 domain containing 1 Neighboring gene transmembrane protein 154 Neighboring gene excision repair cross-complementation group 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables protein domain specific binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
arfaptin-1
Names
ADP-ribosylation factor interacting protein 1 (arfaptin 1)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011459.2 → NP_001011459.1  arfaptin-1

    See identical proteins and their annotated locations for NP_001011459.1

    Status: PROVISIONAL

    Source sequence(s)
    BC088571
    UniProtKB/TrEMBL
    Q28F10, Q5I095
    Conserved Domains (1) summary
    cd07660
    Location:125 → 325
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    55315156..55389127 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018092875.2 → XP_017948364.2  arfaptin-1 isoform X5

    UniProtKB/TrEMBL
    A0A8J0T1V3, Q28F10
    Conserved Domains (1) summary
    cd07660
    Location:109 → 309
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  2. XM_012961385.3 → XP_012816839.2  arfaptin-1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QMT3, Q28F10
    Related
    ENSXETP00000069824.2, ENSXETT00000089436.2
    Conserved Domains (1) summary
    cd07660
    Location:179 → 379
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  3. XM_012961374.3 → XP_012816828.2  arfaptin-1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8Q0X1, Q28F10
    Related
    ENSXETP00000062708.3, ENSXETT00000065453.3
    Conserved Domains (1) summary
    cd07660
    Location:157 → 357
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  4. XM_031899365.1 → XP_031755225.1  arfaptin-1 isoform X3

    UniProtKB/TrEMBL
    F7AUS3, Q28F10
    Related
    ENSXETP00000003879.5, ENSXETT00000003879.5
    Conserved Domains (1) summary
    cd07660
    Location:147 → 347
    BAR_Arfaptin; The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin

  5. XM_012961396.3 → XP_012816850.2  arfaptin-1 isoform X4

    UniProtKB/TrEMBL
    Q28F10, Q5I095
Nucleotide Protein Strain
Heading Accession and Version

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