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akr1c4 aldo-keto reductase family 1, member C4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 496490, updated on 11-Nov-2023

Summary

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Official Symbol
akr1c4provided by Xenbase
Official Full Name
aldo-keto reductase family 1, member C4provided by Xenbase
Primary source
Xenbase:XB-GENE-5895888
See related
Ensembl:ENSXETG00000047224
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (7642684..7663738, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (1460715..1474387)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene aldo-keto reductase family 1, member C2 Neighboring gene provisional ortholog of carbonyl reductase 1 Neighboring gene aldo-keto reductase family 1, member C1 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
aldo-keto reductase family 1, member C4
Names
aldo-keto reductase family 1, member C4 (chlordecone reductase; 3-alpha hydroxysteroid dehydrogenase, type I; dihydrodiol dehydrogenase 4)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011079.1 → NP_001011079.1  aldo-keto reductase family 1, member C4

    See identical proteins and their annotated locations for NP_001011079.1

    Status: PROVISIONAL

    Source sequence(s)
    BC084466
    UniProtKB/TrEMBL
    Q5XGH3
    Related
    ENSXETP00000110037.1, ENSXETT00000113704.1
    Conserved Domains (1) summary
    COG0656
    Location:7 → 302
    ARA1; Aldo/keto reductase, related to diketogulonate reductase [Secondary metabolites biosynthesis, transport and catabolism]

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    7642684..7663738 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897884.1 → XP_031753744.1  aldo-keto reductase family 1, member C4 isoform X2

    UniProtKB/TrEMBL
    A0A803JQ08
    Related
    ENSXETP00000106732.1, ENSXETT00000119558.1
    Conserved Domains (1) summary
    cl00470
    Location:7 → 305
    AKR_SF; Aldo-keto reductase (AKR) superfamily

  2. XM_031897883.1 → XP_031753743.1  aldo-keto reductase family 1, member C4 isoform X1

    UniProtKB/TrEMBL
    A0A8J1J795
    Related
    ENSXETP00000113453.1, ENSXETT00000106041.1
    Conserved Domains (1) summary
    cl00470
    Location:15 → 313
    AKR_SF; Aldo-keto reductase (AKR) superfamily
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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