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pds5b.S PDS5 cohesin associated factor B S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 495695, updated on 2-May-2024

Summary

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Official Symbol
pds5b.S
Official Full Name
PDS5 cohesin associated factor B S homeolog
Primary source
Xenbase:XB-GENE-6041384
Locus tag
XELAEV_18016172mg
See related
EnsemblRapid:ENSXLAG00005021484
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
as3; aprin; pds5b; aprin-B; pds5b-a; pds5b-b
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Genomic context

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See pds5b.S in Genome Data Viewer
Location:
chromosome: 2S
Exon count:
35
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (145098128..145166848, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (136091081..136159892, complement)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene StAR related lipid transfer domain containing 13 S homeolog Neighboring gene klotho S homeolog Neighboring gene NEDD4 binding protein 2-like 2 S homeolog Neighboring gene ZAR1-like protein S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA repair IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic sister chromatid cohesion IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic sister chromatid cohesion ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within negative regulation of cell population proliferation ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
sister chromatid cohesion protein PDS5 homolog B-B
Names
PDS5, regulator of cohesion maintenance, homolog B
androgen-induced proliferation inhibitor B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001095174.2 → NP_001088643.2  sister chromatid cohesion protein PDS5 homolog B-B

    Status: PROVISIONAL

    Source sequence(s)
    BC086289
    UniProtKB/TrEMBL
    A0A974DJG7
    Related
    ENSXLAP00005063337.1, ENSXLAT00005064805.1
    Conserved Domains (2) summary
    PHA03381
    Location:1224 → 1393
    PHA03381; tegument protein VP22; Provisional
    sd00044
    Location:240 → 261
    HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    145098128..145166848 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041583215.1 → XP_041439149.1  sister chromatid cohesion protein PDS5 homolog B-B isoform X1

    UniProtKB/TrEMBL
    A0A8J1MBR9, A0A974DJG7
    Related
    ENSXLAP00005063392.1, ENSXLAT00005064866.1
    Conserved Domains (3) summary
    PLN02967
    Location:1206 → 1318
    PLN02967; kinase
    PLN03237
    Location:1151 → 1422
    PLN03237; DNA topoisomerase 2; Provisional
    sd00044
    Location:213 → 234
    HEAT; HEAT repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5U241.2 GenPept UniProtKB/Swiss-Prot:Q5U241

Gene LinkOut

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