zgc:101559 zgc:101559 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:101559provided by ZNC
Official Full Name: zgc:101559provided by ZNC
Primary source: ZFIN:ZDB-GENE-041114-122
See related: Ensembl:ENSDARG00000003257 AllianceGenome:ZFIN:ZDB-GENE-041114-122
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be active in Golgi apparatus and endosome. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 9

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	9	NC_007120.7 (17429185..17434157)
105	previous assembly	GRCz10 (GCF_000002035.5)	9	NC_007120.6 (17421473..17426445)

Chromosome 9 - NC_007120.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

fc23d08.x1 (e-PCR)
- UniSTS:193148

fc86d12.x1 (e-PCR)
- UniSTS:194684

fc44d11 (e-PCR)
- UniSTS:189166

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables GTP binding	IBA Inferred from Biological aspect of Ancestor more info
enables GTP binding	IEA Inferred from Electronic Annotation more info
enables GTPase activity	IBA Inferred from Biological aspect of Ancestor more info
enables GTPase activity	IEA Inferred from Electronic Annotation more info
enables nucleotide binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within Rab protein signal transduction	IEA Inferred from Electronic Annotation more info
involved_in autophagosome assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of exocytosis	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
is_active_in endosome	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: Ras-related protein Rab-33B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001007417.1 → NP_001007418.1 Ras-related protein Rab-33B-like

See identical proteins and their annotated locations for NP_001007418.1

Status: PROVISIONAL

Source sequence(s)

BC085368

UniProtKB/TrEMBL

Q5U3W4

Related

ENSDARP00000005530.7, ENSDART00000006256.8

Conserved Domains (2) summary

cd04115
Location:35 → 204

Rab33B_Rab33A; Rab GTPase family 33 includes Rab33A and Rab33B

smart00175
Location:37 → 204

RAB; Rab subfamily of small GTPases