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ATG4C autophagy related 4C cysteine peptidase [ Canis lupus familiaris (dog) ]

Gene ID: 489561, updated on 5-Mar-2024

Summary

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Official Symbol
ATG4Cprovided by VGNC
Official Full Name
autophagy related 4C cysteine peptidaseprovided by VGNC
Primary source
VGNC:VGNC:38224
See related
Ensembl:ENSCAFG00845005004
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (47456697..47542055, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (47335099..47420547, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (47621837..47707196, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (47412900..47497781, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (47358502..47443312, complement)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106558771 Neighboring gene uncharacterized LOC111095935 Neighboring gene uncharacterized LOC111095936 Neighboring gene U2 spliceosomal RNA Neighboring gene nicotinamide riboside kinase 1-like Neighboring gene dedicator of cytokinesis 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4C
Names
ATG4 autophagy related 4 homolog C
XP_022274474.1
XP_038332065.1
XP_038332066.1
XP_038332067.1
XP_038332068.1
XP_038332069.1
XP_038332070.1
XP_038375648.1
XP_038375672.1
XP_038375680.1
XP_038375684.1
XP_038393250.1
XP_038393251.1
XP_038393252.1
XP_038393253.1
XP_038393254.1
XP_038393255.1
XP_038457379.1
XP_038457380.1
XP_038457381.1
XP_038457382.1
XP_038457383.1
XP_038457384.1
XP_038521944.1
XP_038521945.1
XP_038521946.1
XP_038521947.1
XP_038521948.1
XP_038521949.1
XP_852273.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    47456697..47542055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038666019.1 → XP_038521947.1  cysteine protease ATG4C isoform X2

    UniProtKB/TrEMBL
    A0A8C0LUE1, A0A8I3MN07, A0A8P0P2P0
    Related
    ENSCAFP00845007100.1, ENSCAFT00845009005.1
    Conserved Domains (1) summary
    pfam03416
    Location:48 → 366
    Peptidase_C54; Peptidase family C54

  2. XM_038666018.1 → XP_038521946.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C0L0P5, A0A8C0LUE1, A0A8C0S777, A0A8I3MPV7
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  3. XM_038666016.1 → XP_038521944.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C0L0P5, A0A8C0LUE1, A0A8C0S777, A0A8I3MPV7
    Related
    ENSCAFP00845007093.1, ENSCAFT00845008998.1
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  4. XM_038666017.1 → XP_038521945.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C0L0P5, A0A8C0LUE1, A0A8C0S777, A0A8I3MPV7
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  5. XM_038666020.1 → XP_038521948.1  cysteine protease ATG4C isoform X3

    UniProtKB/TrEMBL
    A0A8I3MS42, A0A8I3MZ28, A0A8P0TDK9
    Related
    ENSCAFP00845007090.1, ENSCAFT00845008994.1
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  6. XM_038666021.1 → XP_038521949.1  cysteine protease ATG4C isoform X4

    UniProtKB/TrEMBL
    A0A8C0KX17
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 363
    Peptidase_C54; Peptidase family C54

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    47412900..47497781 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038476140.1 → XP_038332068.1  cysteine protease ATG4C isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:48 → 366
    Peptidase_C54; Peptidase family C54

  2. XM_038476139.1 → XP_038332067.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  3. XM_038476137.1 → XP_038332065.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  4. XM_038476138.1 → XP_038332066.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  5. XM_038476141.1 → XP_038332069.1  cysteine protease ATG4C isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  6. XM_038476142.1 → XP_038332070.1  cysteine protease ATG4C isoform X4

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 363
    Peptidase_C54; Peptidase family C54

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    47358502..47443312 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038601454.1 → XP_038457382.1  cysteine protease ATG4C isoform X2

    Conserved Domains (1) summary
    pfam03416
    Location:48 → 366
    Peptidase_C54; Peptidase family C54

  2. XM_038601453.1 → XP_038457381.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  3. XM_038601451.1 → XP_038457379.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  4. XM_038601452.1 → XP_038457380.1  cysteine protease ATG4C isoform X1

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  5. XM_038601455.1 → XP_038457383.1  cysteine protease ATG4C isoform X3

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  6. XM_038601456.1 → XP_038457384.1  cysteine protease ATG4C isoform X4

    Conserved Domains (1) summary
    pfam03416
    Location:76 → 363
    Peptidase_C54; Peptidase family C54

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    47621837..47707196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038537325.1 → XP_038393253.1  cysteine protease ATG4C isoform X2

    UniProtKB/TrEMBL
    A0A8C0LUE1, A0A8I3MN07, A0A8P0P2P0
    Conserved Domains (1) summary
    pfam03416
    Location:48 → 366
    Peptidase_C54; Peptidase family C54

  2. XM_038537324.1 → XP_038393252.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C0L0P5, A0A8C0LUE1, A0A8C0S777, A0A8I3MPV7
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  3. XM_038537322.1 → XP_038393250.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C0L0P5, A0A8C0LUE1, A0A8C0S777, A0A8I3MPV7
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  4. XM_038537323.1 → XP_038393251.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C0L0P5, A0A8C0LUE1, A0A8C0S777, A0A8I3MPV7
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  5. XM_038537326.1 → XP_038393254.1  cysteine protease ATG4C isoform X3

    UniProtKB/TrEMBL
    A0A8I3MS42, A0A8I3MZ28, A0A8P0TDK9
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  6. XM_038537327.1 → XP_038393255.1  cysteine protease ATG4C isoform X4

    UniProtKB/TrEMBL
    A0A8C0KX17
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 363
    Peptidase_C54; Peptidase family C54

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    47335099..47420547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038519744.1 → XP_038375672.1  cysteine protease ATG4C isoform X2

    UniProtKB/TrEMBL
    A0A8C0LUE1, A0A8I3MN07, A0A8P0P2P0
    Conserved Domains (1) summary
    pfam03416
    Location:48 → 366
    Peptidase_C54; Peptidase family C54

  2. XM_847180.6 → XP_852273.1  cysteine protease ATG4C isoform X1

    See identical proteins and their annotated locations for XP_852273.1

    UniProtKB/TrEMBL
    A0A8C0L0P5, A0A8C0LUE1, A0A8C0S777, A0A8I3MPV7
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  3. XM_038519720.1 → XP_038375648.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C0L0P5, A0A8C0LUE1, A0A8C0S777, A0A8I3MPV7
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  4. XM_022418766.2 → XP_022274474.1  cysteine protease ATG4C isoform X1

    UniProtKB/TrEMBL
    A0A8C0L0P5, A0A8C0LUE1, A0A8C0S777, A0A8I3MPV7
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  5. XM_038519752.1 → XP_038375680.1  cysteine protease ATG4C isoform X3

    UniProtKB/TrEMBL
    A0A8I3MS42, A0A8I3MZ28, A0A8P0TDK9
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 394
    Peptidase_C54; Peptidase family C54

  6. XM_038519756.1 → XP_038375684.1  cysteine protease ATG4C isoform X4

    UniProtKB/TrEMBL
    A0A8C0KX17
    Conserved Domains (1) summary
    pfam03416
    Location:76 → 363
    Peptidase_C54; Peptidase family C54
Nucleotide Protein
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