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NPAT nuclear protein, coactivator of histone transcription [ Canis lupus familiaris (dog) ]

Gene ID: 489420, updated on 5-Mar-2024

Summary

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Official Symbol
NPATprovided by VGNC
Official Full Name
nuclear protein, coactivator of histone transcriptionprovided by VGNC
Primary source
VGNC:VGNC:50638
See related
Ensembl:ENSCAFG00845003530
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See NPAT in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (24326272..24402024)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (24222911..24298814)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (24333340..24409050)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (24373638..24449307)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (24275135..24350711)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene ATM serine/threonine kinase Neighboring gene uncharacterized LOC111095857 Neighboring gene 60S ribosomal protein L31-like Neighboring gene uncharacterized LOC111095856 Neighboring gene uncharacterized LOC111096101 Neighboring gene acetyl-CoA acetyltransferase 1 Neighboring gene uncharacterized LOC102156093 Neighboring gene cullin 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NPAT
Names
nuclear protein, ataxia-telangiectasia locus

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    24326272..24402024
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038665008.1 → XP_038520936.1  protein NPAT isoform X1

    UniProtKB/TrEMBL
    A0A8C0SDR9
    Conserved Domains (1) summary
    pfam15712
    Location:770 → 1468
    NPAT_C; NPAT C-terminus

  2. XM_038665009.1 → XP_038520937.1  protein NPAT isoform X2

    UniProtKB/TrEMBL
    A0A8C0SDR9, A0A8I3MQP7
    Related
    ENSCAFP00845004987.1, ENSCAFT00845006281.1
    Conserved Domains (1) summary
    pfam15712
    Location:770 → 1448
    NPAT_C; NPAT C-terminus

RNA

  1. XR_005426950.1 RNA Sequence

  2. XR_005426948.1 RNA Sequence

  3. XR_005426949.1 RNA Sequence

  4. XR_005426953.1 RNA Sequence

  5. XR_005426954.1 RNA Sequence

  6. XR_005426951.1 RNA Sequence

  7. XR_005426952.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    24373638..24449307
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038475149.1 → XP_038331077.1  protein NPAT isoform X1

  2. XM_038475150.1 → XP_038331078.1  protein NPAT isoform X2

RNA

  1. XR_005325481.1 RNA Sequence

  2. XR_005325479.1 RNA Sequence

  3. XR_005325480.1 RNA Sequence

  4. XR_005325484.1 RNA Sequence

  5. XR_005325485.1 RNA Sequence

  6. XR_005325482.1 RNA Sequence

  7. XR_005325483.1 RNA Sequence

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    24275135..24350711
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038600480.1 → XP_038456408.1  protein NPAT isoform X1

    Conserved Domains (1) summary
    pfam15712
    Location:770 → 1468
    NPAT_C; NPAT C-terminus

  2. XM_038600481.1 → XP_038456409.1  protein NPAT isoform X2

    Conserved Domains (1) summary
    pfam15712
    Location:770 → 1448
    NPAT_C; NPAT C-terminus

RNA

  1. XR_005393882.1 RNA Sequence

  2. XR_005393880.1 RNA Sequence

  3. XR_005393881.1 RNA Sequence

  4. XR_005393885.1 RNA Sequence

  5. XR_005393886.1 RNA Sequence

  6. XR_005393883.1 RNA Sequence

  7. XR_005393879.1 RNA Sequence

  8. XR_005393884.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    24333340..24409050
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038536281.1 → XP_038392209.1  protein NPAT isoform X1

    UniProtKB/TrEMBL
    A0A8C0SDR9
    Conserved Domains (1) summary
    pfam15712
    Location:770 → 1468
    NPAT_C; NPAT C-terminus

  2. XM_038536282.1 → XP_038392210.1  protein NPAT isoform X2

    UniProtKB/TrEMBL
    A0A8C0SDR9
    Conserved Domains (1) summary
    pfam15712
    Location:770 → 1448
    NPAT_C; NPAT C-terminus

RNA

  1. XR_005359331.1 RNA Sequence

  2. XR_005359329.1 RNA Sequence

  3. XR_005359330.1 RNA Sequence

  4. XR_005359334.1 RNA Sequence

  5. XR_005359335.1 RNA Sequence

  6. XR_005359332.1 RNA Sequence

  7. XR_005359333.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    24222911..24298814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022418352.2 → XP_022274060.1  protein NPAT isoform X1

    UniProtKB/TrEMBL
    A0A8C0SDR9
    Conserved Domains (1) summary
    pfam15712
    Location:770 → 1468
    NPAT_C; NPAT C terminus

  2. XM_005619826.4 → XP_005619883.1  protein NPAT isoform X2

    UniProtKB/TrEMBL
    A0A8C0SDR9
    Conserved Domains (1) summary
    pfam15712
    Location:771 → 1448
    NPAT_C; NPAT C terminus

RNA

  1. XR_005345413.1 RNA Sequence

  2. XR_005345409.1 RNA Sequence

  3. XR_005345411.1 RNA Sequence

  4. XR_005345416.1 RNA Sequence

  5. XR_005345418.1 RNA Sequence

  6. XR_002626528.2 RNA Sequence

  7. XR_002626527.2 RNA Sequence

  8. XR_002626529.2 RNA Sequence

Nucleotide Protein
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