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NR2E3 nuclear receptor subfamily 2 group E member 3 [ Canis lupus familiaris (dog) ]

Gene ID: 487629, updated on 5-Mar-2024

Summary

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Gene symbol
NR2E3
Gene description
nuclear receptor subfamily 2 group E member 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 30
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (35578487..35588153)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (35309120..35318785)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (35811616..35821244)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (35529407..35539055)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (35561018..35567025)

Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene thrombospondin type 1 domain containing 4 Neighboring gene microtubule-associated protein RP/EB family member 1-like Neighboring gene uncharacterized LOC102155082 Neighboring gene myosin IXA Neighboring gene U6 spliceosomal RNA Neighboring gene SUMO peptidase family member, NEDD8 specific

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nuclear receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
photoreceptor-specific nuclear receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051834.1 Reference ROS_Cfam_1.0

    Range
    35578487..35588153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038441752.1 → XP_038297680.1  photoreceptor-specific nuclear receptor isoform X1

    UniProtKB/TrEMBL
    A0A8C0K1U2
    Conserved Domains (2) summary
    cd06950
    Location:181 → 387
    NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
    cd06970
    Location:40 → 130
    NR_DBD_PNR; DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049290.1 Alternate UMICH_Zoey_3.1

    Range
    35529407..35539055
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038517527.1 → XP_038373455.1  photoreceptor-specific nuclear receptor isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

    Range
    35561018..35567025
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038644102.1 → XP_038500030.1  photoreceptor-specific nuclear receptor isoform X2

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

    Range
    35811616..35821244
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038579890.1 → XP_038435818.1  photoreceptor-specific nuclear receptor isoform X1

    UniProtKB/TrEMBL
    A0A8C0K1U2

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    35309120..35318785
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038461065.1 → XP_038316993.1  photoreceptor-specific nuclear receptor isoform X1

    UniProtKB/TrEMBL
    A0A8C0K1U2
    Conserved Domains (2) summary
    cd06950
    Location:181 → 386
    NR_LBD_Tlx_PNR_like; The ligand binding domain of Tailless-like proteins, orphan nuclear receptors
    cd06970
    Location:40 → 130
    NR_DBD_PNR; DNA-binding domain of the photoreceptor cell-specific nuclear receptor (PNR) is composed of two C4-type zinc fingers
Nucleotide Protein
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