AQR aquarius intron-binding spliceosomal factor [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: AQRprovided by VGNC
Official Full Name: aquarius intron-binding spliceosomal factorprovided by VGNC
Primary source: VGNC:VGNC:38022
See related: Ensembl:ENSCAFG00845031121
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 30

Exon count:: 35

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	30	NC_051834.1 (2685677..2785077, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	30	NC_006612.4 (2621691..2721085, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	30	NC_049251.1 (2848929..2948341, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	30	NC_049290.1 (2620822..2720171, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	30	NC_049771.1 (2720337..2819759, complement)

Chromosome 30 - NC_051834.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables helicase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables mRNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of catalytic step 2 spliceosome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: intron-binding protein aquarius; LOW QUALITY PROTEIN: RNA helicase aquarius; RNA helicase aquarius

Names: aquarius homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051834.1 Reference ROS_Cfam_1.0

Range

2685677..2785077 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038441892.1 → XP_038297820.1 RNA helicase aquarius

UniProtKB/TrEMBL

A0A8C0RTX5, A0A8C0Z662

Related

ENSCAFP00845043522.1, ENSCAFT00845055332.1

Conserved Domains (4) summary

PRK10856
Location:1413 → 1480

PRK10856; cytoskeleton protein RodZ

cd18808
Location:1140 → 1323

SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases

cd17935
Location:797 → 1152

EEXXQc_AQR; EEXXQ-box helicase domain of AQR

pfam16399
Location:18 → 802

Aquarius_N; Intron-binding protein aquarius N-terminus

Alternate UMICH_Zoey_3.1

Genomic

NC_049290.1 Alternate UMICH_Zoey_3.1

Range

2620822..2720171 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038516377.1 → XP_038372305.1 LOW QUALITY PROTEIN: RNA helicase aquarius

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049771.1 Alternate UNSW_CanFamBas_1.0

Range

2720337..2819759 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038644231.1 → XP_038500159.1 RNA helicase aquarius

Conserved Domains (4) summary

PRK10856
Location:1413 → 1480

PRK10856; cytoskeleton protein RodZ

cd18808
Location:1140 → 1323

SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases

cd17935
Location:797 → 1152

EEXXQc_AQR; EEXXQ-box helicase domain of AQR

pfam16399
Location:18 → 802

Aquarius_N; Intron-binding protein aquarius N-terminus

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049251.1 Alternate UU_Cfam_GSD_1.0

Range

2848929..2948341 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038579970.1 → XP_038435898.1 RNA helicase aquarius

UniProtKB/TrEMBL

A0A8C0RTX5, A0A8C0Z662

Conserved Domains (4) summary

PRK10856
Location:1413 → 1480

PRK10856; cytoskeleton protein RodZ

cd18808
Location:1140 → 1323

SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases

cd17935
Location:797 → 1152

EEXXQc_AQR; EEXXQ-box helicase domain of AQR

pfam16399
Location:18 → 802

Aquarius_N; Intron-binding protein aquarius N-terminus

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

2621691..2721085 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_535425.7 → XP_535425.4 RNA helicase aquarius

UniProtKB/TrEMBL

A0A8C0RTX5, A0A8C0Z662

Conserved Domains (4) summary

PRK10856
Location:1413 → 1480

PRK10856; cytoskeleton protein RodZ

cd18808
Location:1140 → 1323

SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases

cd17935
Location:797 → 1152

EEXXQc_AQR; EEXXQ-box helicase domain of AQR

pfam16399
Location:18 → 802

Aquarius_N; Intron-binding protein aquarius N-terminus