capza1b capping actin protein of muscle Z-line subunit alpha 1b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: capza1bprovided by ZNC
Official Full Name: capping actin protein of muscle Z-line subunit alpha 1bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-031002-24
See related: Ensembl:ENSDARG00000056090 AllianceGenome:ZFIN:ZDB-GENE-031002-24
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sb:cb852; zK16K6.1; wu:fb36c09; wu:fc85a01; wu:fj45f05; zgc:101755; si:dkey-16k6.1
Summary: Predicted to enable actin filament binding activity. Predicted to be involved in actin cytoskeleton organization and barbed-end actin filament capping. Predicted to act upstream of or within actin filament capping. Predicted to be part of F-actin capping protein complex. Is expressed in adaxial cell; myotome; and somite. Orthologous to human CAPZA1 (capping actin protein of muscle Z-line subunit alpha 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (27807974..27817489)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (27788835..27798350)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fc85a01.x1 (e-PCR)
- UniSTS:194638

fb36c09.x1 (e-PCR)
- UniSTS:203144

fj45f05.x1 (e-PCR)
- UniSTS:188579

fj12h11.x1 (e-PCR)
- UniSTS:198566

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables actin binding	IEA Inferred from Electronic Annotation more info
enables actin filament binding	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in actin cytoskeleton organization	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within actin filament capping	IEA Inferred from Electronic Annotation more info
involved_in barbed-end actin filament capping	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within barbed-end actin filament capping	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of F-actin capping protein complex	IBA Inferred from Biological aspect of Ancestor more info
part_of F-actin capping protein complex	IEA Inferred from Electronic Annotation more info
is_active_in cortical cytoskeleton	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: F-actin-capping protein subunit alpha-1b

Names: F-actin capping protein alpha-1 subunit; capping protein (actin filament) muscle Z-line, alpha 1b; scapping protein (actin filament) muscle Z-line, alpha 1b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.