A4GALT alpha 1,4-galactosyltransferase [Pan troglodytes (chimpanzee)] - Gene

Summary

Official Symbol: A4GALTprovided by VGNC
Official Full Name: alpha 1,4-galactosyltransferaseprovided by VGNC
Primary source: VGNC:VGNC:53397
Locus tag: CK820_G0027468
See related: Ensembl:ENSPTRG00000029414
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Pan troglodytes
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2)	23	NC_086016.1 (44689072..44718197, complement)
RS_2023_04	previous assembly	NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1)	22	NC_072420.1 (37721466..37750591, complement)

Chromosome 23 - NC_086016.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables galactosyltransferase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in glycosphingolipid biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: lactosylceramide 4-alpha-galactosyltransferase

Names: UDP-galactose:beta-D-galactosyl-beta1-R 4-alpha-D-galactosyltransferase; alpha 1,4-galactosyltransferase (P blood group); alpha 1,4-galactosyltransferase (globotriaosylceramide synthase, P blood group); alpha-1,4-N-acetylglucosaminyltransferase; gb3 synthase; globotriaosylceramide synthase

NP_001009123.1

EC 2.4.1.228

XP_009436733.2

EC 2.4.1.228

XP_016794303.1

EC 2.4.1.228

XP_024208283.1

EC 2.4.1.228

XP_024208284.1

EC 2.4.1.228

XP_024208286.1

EC 2.4.1.228

XP_063663631.1

EC 2.4.1.228

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001009123.1 → NP_001009123.1 lactosylceramide 4-alpha-galactosyltransferase

See identical proteins and their annotated locations for NP_001009123.1

Status: PROVISIONAL

Source sequence(s)

AB041419

UniProtKB/Swiss-Prot

Q9N291

Related

ENSPTRP00000055744.2, ENSPTRT00000064195.2

Conserved Domains (2) summary

pfam04572
Location:227 → 349

Gb3_synth; Alpha 1,4-glycosyltransferase conserved region

cl19952
Location:94 → 214

Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

NC_086016.1 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Range

44689072..44718197 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_009438458.4 → XP_009436733.2 lactosylceramide 4-alpha-galactosyltransferase isoform X1

UniProtKB/TrEMBL

A0A2J8LMW1, A0A6D2X685, H2RBI4, K7D3Y2

Conserved Domains (2) summary

pfam04572
Location:227 → 349

Gb3_synth; Alpha 1,4-glycosyltransferase conserved region

cl19952
Location:94 → 214

Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
XM_024352516.3 → XP_024208284.1 lactosylceramide 4-alpha-galactosyltransferase isoform X1

UniProtKB/TrEMBL

A0A2J8LMW1, A0A6D2X685, H2RBI4, K7D3Y2

Conserved Domains (2) summary

pfam04572
Location:227 → 349

Gb3_synth; Alpha 1,4-glycosyltransferase conserved region

cl19952
Location:94 → 214

Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
XM_063807561.1 → XP_063663631.1 lactosylceramide 4-alpha-galactosyltransferase isoform X1

UniProtKB/TrEMBL

A0A2J8LMW1, A0A6D2X685, H2RBI4, K7D3Y2
XM_016938814.3 → XP_016794303.1 lactosylceramide 4-alpha-galactosyltransferase isoform X1

UniProtKB/TrEMBL

A0A2J8LMW1, A0A6D2X685, H2RBI4, K7D3Y2

Conserved Domains (2) summary

pfam04572
Location:227 → 349

Gb3_synth; Alpha 1,4-glycosyltransferase conserved region

cl19952
Location:94 → 214

Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
XM_024352518.3 → XP_024208286.1 lactosylceramide 4-alpha-galactosyltransferase isoform X1

UniProtKB/TrEMBL

A0A2J8LMW1, A0A6D2X685, H2RBI4, K7D3Y2

Conserved Domains (2) summary

pfam04572
Location:227 → 349

Gb3_synth; Alpha 1,4-glycosyltransferase conserved region

cl19952
Location:94 → 214

Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
XM_024352515.3 → XP_024208283.1 lactosylceramide 4-alpha-galactosyltransferase isoform X1

UniProtKB/TrEMBL

A0A2J8LMW1, A0A6D2X685, H2RBI4, K7D3Y2

Conserved Domains (2) summary

pfam04572
Location:227 → 349

Gb3_synth; Alpha 1,4-glycosyltransferase conserved region

cl19952
Location:94 → 214

Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif