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KDM1B lysine demethylase 1B [ Pan troglodytes (chimpanzee) ]

Gene ID: 462459, updated on 3-Apr-2024

Summary

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Official Symbol
KDM1Bprovided by VGNC
Official Full Name
lysine demethylase 1Bprovided by VGNC
Primary source
VGNC:VGNC:7900
Locus tag
CK820_G0017087
See related
Ensembl:ENSPTRG00000017757
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
AOF1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 5 NC_072403.2 (24111519..24180470)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 6 NC_072404.1 (24111511..24180479)

Chromosome 5 - NC_072403.2Genomic Context describing neighboring genes Neighboring gene NHL repeat containing E3 ubiquitin protein ligase 1 Neighboring gene thiopurine S-methyltransferase Neighboring gene DEK proto-oncogene Neighboring gene ring finger protein 144B Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific histone demethylase 1B; lysine-specific histone demethylase 2
Names
amine oxidase (flavin containing) domain 1
lysine (K)-specific demethylase 1B
XP_009448847.1
XP_009448848.1
XP_009448849.1
XP_009448850.1
XP_009448851.1
XP_009448852.2
XP_016810460.1
XP_016810461.1
XP_054541600.1
XP_054541601.1
XP_063668199.1
XP_063668200.1
XP_063668201.1
XP_063668202.1
XP_063668203.1
XP_063668204.1
XP_063668205.1
XP_063668206.1
XP_063668207.1
XP_063668208.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072403.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    24111519..24180470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009450575.5 → XP_009448850.1  lysine-specific histone demethylase 2 isoform X10

    UniProtKB/TrEMBL
    A0A2J8MT72
    Conserved Domains (2) summary
    pfam04433
    Location:381 → 463
    SWIRM; SWIRM domain
    pfam07496
    Location:238 → 291
    zf-CW; CW-type Zinc Finger

  2. XM_009450572.5 → XP_009448847.1  lysine-specific histone demethylase 2 isoform X15

    UniProtKB/TrEMBL
    A0A2J8MT72
    Conserved Domains (2) summary
    PLN03000
    Location:407 → 921
    PLN03000; amine oxidase
    pfam07496
    Location:238 → 291
    zf-CW; CW-type Zinc Finger

  3. XM_016954971.4 → XP_016810460.1  lysine-specific histone demethylase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2J8MT72
    Conserved Domains (2) summary
    PLN03000
    Location:405 → 919
    PLN03000; amine oxidase
    pfam07496
    Location:238 → 291
    zf-CW; CW-type Zinc Finger

  4. XM_016954972.4 → XP_016810461.1  lysine-specific histone demethylase 2 isoform X4

    UniProtKB/TrEMBL
    A0A2J8MT72

  5. XM_009450576.5 → XP_009448851.1  lysine-specific histone demethylase 2 isoform X13

    UniProtKB/TrEMBL
    A0A2J8MT72
    Conserved Domains (2) summary
    PLN03000
    Location:323 → 789
    PLN03000; amine oxidase
    pfam07496
    Location:238 → 291
    zf-CW; CW-type Zinc Finger

  6. XM_063812131.1 → XP_063668201.1  lysine-specific histone demethylase 2 isoform X6

  7. XM_009450577.5 → XP_009448852.2  lysine-specific histone demethylase 2 isoform X16

    UniProtKB/TrEMBL
    A0A2J8MT72

  8. XM_063812129.1 → XP_063668199.1  lysine-specific histone demethylase 2 isoform X3

  9. XM_063812137.1 → XP_063668207.1  lysine-specific histone demethylase 2 isoform X18

  10. XM_063812138.1 → XP_063668208.1  lysine-specific histone demethylase 2 isoform X19

  11. XM_063812130.1 → XP_063668200.1  lysine-specific histone demethylase 2 isoform X5

  12. XM_009450573.5 → XP_009448848.1  lysine-specific histone demethylase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2J8MT72, H2QSC6
    Related
    ENSPTRP00000030324.7
    Conserved Domains (2) summary
    PLN02328
    Location:402 → 919
    PLN02328; lysine-specific histone demethylase 1 homolog
    pfam07496
    Location:238 → 291
    zf-CW; CW-type Zinc Finger

  13. XM_063812136.1 → XP_063668206.1  lysine-specific histone demethylase 2 isoform X14

  14. XM_054685625.2 → XP_054541600.1  lysine-specific histone demethylase 2 isoform X17

  15. XM_063812135.1 → XP_063668205.1  lysine-specific histone demethylase 2 isoform X12

  16. XM_063812132.1 → XP_063668202.1  lysine-specific histone demethylase 2 isoform X8

  17. XM_063812133.1 → XP_063668203.1  lysine-specific histone demethylase 2 isoform X9

  18. XM_009450574.5 → XP_009448849.1  lysine-specific histone demethylase 2 isoform X7

    See identical proteins and their annotated locations for XP_009448849.1

    UniProtKB/TrEMBL
    A0A2J8MT72
    Conserved Domains (2) summary
    PLN03000
    Location:307 → 821
    PLN03000; amine oxidase
    pfam07496
    Location:138 → 191
    zf-CW; CW-type Zinc Finger

  19. XM_054685626.2 → XP_054541601.1  lysine-specific histone demethylase 2 isoform X20

  20. XM_063812134.1 → XP_063668204.1  lysine-specific histone demethylase 2 isoform X11

Nucleotide Protein
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