U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ACSL1 acyl-CoA synthetase long chain family member 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 461631, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
ACSL1provided by VGNC
Official Full Name
acyl-CoA synthetase long chain family member 1provided by VGNC
Primary source
VGNC:VGNC:550
Locus tag
CK820_G0031730
See related
Ensembl:ENSPTRG00000016644
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (186396911..186468428, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (186356321..186427838, complement)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene primase and DNA directed polymerase Neighboring gene centromere protein U Neighboring gene uncharacterized LOC107974504 Neighboring gene helt bHLH transcription factor

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables long-chain fatty acid-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
long-chain-fatty-acid--CoA ligase 1
NP_001267061.1
XP_009446801.3
XP_009446802.3
XP_009446803.3
XP_009446804.3
XP_009446805.3
XP_009446808.3
XP_016806484.3
XP_016806486.3
XP_016806487.3
XP_016806488.3
XP_016806489.3
XP_016806490.3
XP_054538650.1
XP_054538651.1
XP_054538652.1
XP_054538653.1
XP_054538654.1
XP_054538655.1
XP_054538656.1
XP_054538657.1
XP_054538658.1
XP_063664516.1
XP_063664517.1
XP_063664518.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280132.1 → NP_001267061.1  long-chain-fatty-acid--CoA ligase 1

    See identical proteins and their annotated locations for NP_001267061.1

    Status: PROVISIONAL

    Source sequence(s)
    AK307049
    UniProtKB/TrEMBL
    A0A2J8L882, A0A8I3B1E4, G2HJY5, K7AD39, K7CN88
    Related
    ENSPTRP00000080214.1, ENSPTRT00000090702.1
    Conserved Domains (2) summary
    PLN02736
    Location:86 → 696
    PLN02736; long-chain acyl-CoA synthetase
    cd05927
    Location:116 → 693
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    186396911..186468428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016950997.3 → XP_016806486.3  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3STD5

  2. XM_054682682.2 → XP_054538657.1  long-chain-fatty-acid--CoA ligase 1 isoform X3

  3. XM_016950995.4 → XP_016806484.3  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3STD5

  4. XM_063808447.1 → XP_063664517.1  long-chain-fatty-acid--CoA ligase 1 isoform X6

  5. XM_016951001.4 → XP_016806490.3  long-chain-fatty-acid--CoA ligase 1 isoform X5

  6. XM_054682681.2 → XP_054538656.1  long-chain-fatty-acid--CoA ligase 1 isoform X4

  7. XM_016950999.4 → XP_016806488.3  long-chain-fatty-acid--CoA ligase 1 isoform X2

    UniProtKB/TrEMBL
    H2QQI4

  8. XM_016951000.4 → XP_016806489.3  long-chain-fatty-acid--CoA ligase 1 isoform X3

  9. XM_063808448.1 → XP_063664518.1  long-chain-fatty-acid--CoA ligase 1 isoform X7

  10. XM_009448530.5 → XP_009446805.3  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3STD5

  11. XM_009448529.5 → XP_009446804.3  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3STD5

  12. XM_054682679.2 → XP_054538654.1  long-chain-fatty-acid--CoA ligase 1 isoform X3

  13. XM_054682683.2 → XP_054538658.1  long-chain-fatty-acid--CoA ligase 1 isoform X5

  14. XM_054682678.2 → XP_054538653.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    UniProtKB/TrEMBL
    H2QQI4

  15. XM_054682680.2 → XP_054538655.1  long-chain-fatty-acid--CoA ligase 1 isoform X3

  16. XM_054682675.2 → XP_054538650.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3STD5

  17. XM_054682676.2 → XP_054538651.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    UniProtKB/TrEMBL
    H2QQI4

  18. XM_009448527.5 → XP_009446802.3  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3STD5

  19. XM_016950998.4 → XP_016806487.3  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3STD5

  20. XM_009448526.5 → XP_009446801.3  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3STD5

  21. XM_063808446.1 → XP_063664516.1  long-chain-fatty-acid--CoA ligase 1 isoform X3

  22. XM_009448533.5 → XP_009446808.3  long-chain-fatty-acid--CoA ligase 1 isoform X2

    UniProtKB/TrEMBL
    H2QQI4

  23. XM_054682677.2 → XP_054538652.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    UniProtKB/TrEMBL
    H2QQI4

  24. XM_009448528.5 → XP_009446803.3  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3STD5
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Miscellaneous