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AFP alpha fetoprotein [ Pan troglodytes (chimpanzee) ]

Gene ID: 461258, updated on 3-Apr-2024

Summary

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Official Symbol
AFPprovided by VGNC
Official Full Name
alpha fetoproteinprovided by VGNC
Primary source
VGNC:VGNC:6471
Locus tag
CK820_G0003468
See related
Ensembl:ENSPTRG00000016151
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 3 NC_072401.2 (56655133..56673998, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 4 NC_072402.1 (56655107..56672002, complement)

Chromosome 3 - NC_072401.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104006076 Neighboring gene afamin Neighboring gene albumin Neighboring gene uncharacterized LOC107974297 Neighboring gene small nucleolar RNA SNORA3/SNORA45 family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in blood microparticle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-fetoprotein
Names
Alpha-1-fetoprotein
Alpha-fetoglobulin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072401.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    56655133..56673998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063809567.1 → XP_063665637.1  alpha-fetoprotein isoform X1

  2. XM_016951064.3 → XP_016806553.2  alpha-fetoprotein isoform X2

    UniProtKB/TrEMBL
    A0A2I3TUE1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q28789.1 GenPept UniProtKB/Swiss-Prot:Q28789

Gene LinkOut

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Research Materials
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