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FLACC1 flagellum associated containing coiled-coil domains 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 459875, updated on 3-Apr-2024

Summary

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Official Symbol
FLACC1provided by VGNC
Official Full Name
flagellum associated containing coiled-coil domains 1provided by VGNC
Primary source
VGNC:VGNC:67
Locus tag
CK820_G0014831
See related
Ensembl:ENSPTRG00000012803
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
ALS2CR12
Orthologs
human all
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Genomic context

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Location:
chromosome: 2B
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (103317261..103392670, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (103317136..103400295, complement)

Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene CASP8 and FADD like apoptosis regulator Neighboring gene large ribosomal subunit protein eL38-like Neighboring gene caspase 10 Neighboring gene caspase 8 Neighboring gene trafficking kinesin protein 2 Neighboring gene SCYL2 pseudogene 1 Neighboring gene STE20 related adaptor beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Major chimpanzee-specific structural changes in sperm development-associated genes. Kim RN, et al. Funct Integr Genomics, 2011 Sep. PMID 21484476

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
flagellum-associated coiled-coil domain-containing protein 1
Names
ALS2 chromosome region 12
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12
amyotrophic lateral sclerosis 2 chromosomal region candidate gene 12 protein
amyotrophic lateral sclerosis 2 chromosome region 12
amyotrophic lateral sclerosis 2 chromosome region candidate 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001280196.1 → NP_001267125.1  flagellum-associated coiled-coil domain-containing protein 1

    See identical proteins and their annotated locations for NP_001267125.1

    Status: PROVISIONAL

    Source sequence(s)
    AK306984
    UniProtKB/TrEMBL
    A0A2I3RQ11, G2HJS0
    Related
    ENSPTRP00000066791.1, ENSPTRT00000106032.1
    Conserved Domains (1) summary
    TIGR02169
    Location:117 → 380
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    103317261..103392670 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016949342.4 → XP_016804831.1  flagellum-associated coiled-coil domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RQ11, A0A2J8N561, A0A6D2W4M2, H2R693
    Conserved Domains (1) summary
    cl25732
    Location:117 → 380
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_009443699.5 → XP_009441974.1  flagellum-associated coiled-coil domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RQ11, A0A2J8N561, A0A6D2W4M2, H2R693
    Related
    ENSPTRP00000048872.4
    Conserved Domains (1) summary
    cl25732
    Location:117 → 380
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_054678814.2 → XP_054534789.1  flagellum-associated coiled-coil domain-containing protein 1 isoform X2

  4. XM_009443701.5 → XP_009441976.1  flagellum-associated coiled-coil domain-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2I3RQ11
    Conserved Domains (1) summary
    cl19764
    Location:227 → 349
    COG6; Conserved oligomeric complex COG6

RNA

  1. XR_010149669.1 RNA Sequence

  2. XR_010149670.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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