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AHCTF1 AT-hook containing transcription factor 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 457874, updated on 29-Mar-2024

Summary

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Official Symbol
AHCTF1provided by VGNC
Official Full Name
AT-hook containing transcription factor 1provided by VGNC
Primary source
VGNC:VGNC:99656
Locus tag
CK820_G0037085
See related
Ensembl:ENSPTRG00000051402
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
40
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (2183543..2277468)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (229045770..229139583, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor panTroV1R-ps202 pseudogene Neighboring gene zinc finger protein 695 Neighboring gene uncharacterized LOC104004824 Neighboring gene kinesin-like protein KIF28P Neighboring gene mucin-12-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
protein ELYS

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    2183543..2277468
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024353009.3 → XP_024208777.2  protein ELYS isoform X2

  2. XM_063809324.1 → XP_063665394.1  protein ELYS isoform X8

  3. XM_024353019.3 → XP_024208787.1  protein ELYS isoform X9

    Conserved Domains (2) summary
    pfam13934
    Location:759 → 980
    ELYS; Nuclear pore complex assembly
    pfam16687
    Location:37 → 523
    ELYS-bb; beta-propeller of ELYS nucleoporin

  4. XM_024353014.2 → XP_024208782.2  protein ELYS isoform X5

  5. XM_024353012.2 → XP_024208780.2  protein ELYS isoform X4

  6. XM_024353008.2 → XP_024208776.2  protein ELYS isoform X1

  7. XM_024353010.2 → XP_024208778.2  protein ELYS isoform X3

  8. XM_063809328.1 → XP_063665398.1  protein ELYS isoform X8

  9. XM_063809323.1 → XP_063665393.1  protein ELYS isoform X7

  10. XM_024353015.3 → XP_024208783.2  protein ELYS isoform X6

RNA

  1. XR_010156407.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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