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ATP2B1 ATPase plasma membrane Ca2+ transporting 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 452116, updated on 3-Apr-2024

Summary

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Official Symbol
ATP2B1provided by VGNC
Official Full Name
ATPase plasma membrane Ca2+ transporting 1provided by VGNC
Primary source
VGNC:VGNC:8343
Locus tag
CK820_G0035507
See related
Ensembl:ENSPTRG00000005286
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 10 NC_072408.2 (96404460..96472438, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 12 NC_072410.1 (95021708..95142591, complement)

Chromosome 10 - NC_072408.2Genomic Context describing neighboring genes Neighboring gene POC1 centriolar protein B Neighboring gene uncharacterized LOC104001628 Neighboring gene uncharacterized LOC134807494 Neighboring gene centromere protein C-like Neighboring gene uncharacterized LOC100613094 Neighboring gene U6 spliceosomal RNA Neighboring gene mitochondrial ribosomal protein L2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables PDZ domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plasma membrane calcium-transporting ATPase 1
Names
ATPase, Ca++ transporting, plasma membrane 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072408.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    96404460..96472438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054664586.2 → XP_054520561.1  plasma membrane calcium-transporting ATPase 1 isoform X5

  2. XM_054664583.2 → XP_054520558.1  plasma membrane calcium-transporting ATPase 1 isoform X2

  3. XM_054664589.2 → XP_054520564.1  plasma membrane calcium-transporting ATPase 1 isoform X8

  4. XM_054664587.2 → XP_054520562.1  plasma membrane calcium-transporting ATPase 1 isoform X6

  5. XM_054664585.2 → XP_054520560.1  plasma membrane calcium-transporting ATPase 1 isoform X4

  6. XM_054664590.2 → XP_054520565.1  plasma membrane calcium-transporting ATPase 1 isoform X9

  7. XM_063785975.1 → XP_063642045.1  plasma membrane calcium-transporting ATPase 1 isoform X3

    UniProtKB/TrEMBL
    A0A2J8KVC0, A0A6D2XLE0, K6ZJR8

  8. XM_016923956.4 → XP_016779445.1  plasma membrane calcium-transporting ATPase 1 isoform X1

    UniProtKB/TrEMBL
    A0A2I3RG69
    Conserved Domains (2) summary
    TIGR01517
    Location:15 → 1064
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1103 → 1178
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  9. XM_016923963.4 → XP_016779452.1  plasma membrane calcium-transporting ATPase 1 isoform X10

    UniProtKB/TrEMBL
    A0A2I3RG69, H2R244
    Related
    ENSPTRP00000043371.3
    Conserved Domains (2) summary
    TIGR01517
    Location:15 → 1064
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam12424
    Location:1103 → 1187
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal

  10. XM_054664588.2 → XP_054520563.1  plasma membrane calcium-transporting ATPase 1 isoform X7

Nucleotide Protein
Heading Accession and Version

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