zgc:103482 zgc:103482 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:103482provided by ZNC
Official Full Name: zgc:103482provided by ZNC
Primary source: ZFIN:ZDB-GENE-041010-115
See related: Ensembl:ENSDARG00000025174 AllianceGenome:ZFIN:ZDB-GENE-041010-115
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: habp4
Summary: Predicted to enable RNA binding activity. Predicted to be involved in positive regulation of RNA splicing and positive regulation of translational initiation. Predicted to be active in cytoplasm and nucleus. Is expressed in primordial germ cell. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (20396863..20402686)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (20360222..20366050)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables ribosome binding	IDA Inferred from Direct Assay more info	PubMed
enables translation elongation factor binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in positive regulation of RNA splicing	IBA Inferred from Biological aspect of Ancestor more info
involved_in positive regulation of translational initiation	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within regulation of translation	IEA Inferred from Electronic Annotation more info
involved_in ribosome hibernation	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in Cajal body	IEA Inferred from Electronic Annotation more info
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasmic stress granule	IEA Inferred from Electronic Annotation more info
located_in nuclear speck	IEA Inferred from Electronic Annotation more info
located_in nucleolus	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: intracellular hyaluronan-binding protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001006022.1 → NP_001006022.1 intracellular hyaluronan-binding protein 4

See identical proteins and their annotated locations for NP_001006022.1

Status: PROVISIONAL

Source sequence(s)

BC083399

UniProtKB/Swiss-Prot

B0R085, Q5XJA5

Related

ENSDARP00000007173.7, ENSDART00000003299.9

Conserved Domains (2) summary

pfam04774
Location:152 → 253

HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

pfam16174
Location:11 → 96

IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007132.7 Reference GRCz11 Primary Assembly

Range

20396863..20402686

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005161172.4 → XP_005161229.1 intracellular hyaluronan-binding protein 4 isoform X1

UniProtKB/Swiss-Prot

B0R085, Q5XJA5

UniProtKB/TrEMBL

A0A8M2B834

Conserved Domains (2) summary

pfam04774
Location:152 → 254

HABP4_PAI-RBP1; Hyaluronan / mRNA binding family

pfam16174
Location:11 → 96

IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal