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ACSL1 acyl-CoA synthetase long chain family member 1 [ Sus scrofa (pig) ]

Gene ID: 448982, updated on 5-Mar-2024

Summary

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Official Symbol
ACSL1provided by VGNC
Official Full Name
acyl-CoA synthetase long chain family member 1provided by VGNC
Primary source
VGNC:VGNC:96294
See related
Ensembl:ENSSSCG00000015784
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
FACL2
Expression
Broad expression in liver (RPKM 481.5), mixtures (RPKM 220.1) and 5 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 15
Exon count:
26
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (45866858..45936327, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (52526606..52595992, complement)

Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene caspase 3 Neighboring gene primase and DNA directed polymerase Neighboring gene centromere protein U Neighboring gene helt bHLH transcription factor Neighboring gene solute carrier family 25 member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Expression and genome polymorphism of ACSL1 gene in different pig breeds. Li Q, et al. Mol Biol Rep, 2012 Sep. PMID 22714915
  2. Nucleotide sequence and polymorphism of the pig acyl coenzyme A synthetase long-chain 1 (ACSL1) gene. Vidal O, et al. Anim Biotechnol, 2007. PMID 17453651
  3. Assignment of the fatty acid Coenzyme A ligase, long chain 2 (FACL2) gene to porcine chromosome 15. Vidal O, et al. Anim Genet, 2004 Jun. PMID 15147400
  4. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Transcriptional Regulation Associated with Subcutaneous Adipogenesis in Porcine ACSL1 Gene.
    Title: Transcriptional Regulation Associated with Subcutaneous Adipogenesis in Porcine ACSL1 Gene.
  2. The pig ACSL1 gene expresses differently in different tissues and pig breeds.
    Title: Expression and genome polymorphism of ACSL1 gene in different pig breeds.
  3. Authors have sequenced 3,013 bp of the pig acyl coenzyme A long-chain synthetase 1 (ACSL1) gene.
    Title: Nucleotide sequence and polymorphism of the pig acyl coenzyme A synthetase long-chain 1 (ACSL1) gene.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty-acyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain-fatty-acid--CoA ligase 1
Names
acyl coenzyme A synthetase long-chain 1
fatty acid coenzyme A ligase long-chain 2
NP_001161101.2
XP_005671764.1
XP_005671765.1
XP_005671766.1
XP_020930363.1
XP_020930364.1
XP_020930365.1
XP_020930366.1
XP_020930367.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001167629.2 → NP_001161101.2  long-chain-fatty-acid--CoA ligase 1

    Status: PROVISIONAL

    Source sequence(s)
    AY690660, FS671895
    UniProtKB/TrEMBL
    A0A8D1CDG3
    Conserved Domains (2) summary
    PLN02736
    Location:87 → 695
    PLN02736; long-chain acyl-CoA synthetase
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

    Range
    45866858..45936327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005671708.3 → XP_005671765.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    See identical proteins and their annotated locations for XP_005671765.1

    UniProtKB/TrEMBL
    A0A0B8S0C6, A0A287BMY7, A0A4X1VWL0, A0A8D1CDG3
    Conserved Domains (1) summary
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  2. XM_005671707.3 → XP_005671764.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    UniProtKB/TrEMBL
    A0A480QCC9, A0A4X1VRQ6, A0A8D1CDH9
    Related
    ENSSSCP00000074552.2, ENSSSCT00000081816.2
    Conserved Domains (1) summary
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  3. XM_021074708.1 → XP_020930367.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    UniProtKB/TrEMBL
    A0A480QCC9, A0A4X1VRQ6, A0A8D1CDH9
    Conserved Domains (1) summary
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  4. XM_021074705.1 → XP_020930364.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A0B8S0C6, A0A287BMY7, A0A4X1VWL0, A0A8D1CDG3
    Related
    ENSSSCP00000061539.2, ENSSSCT00000069724.2
    Conserved Domains (1) summary
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  5. XM_021074706.1 → XP_020930365.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A0B8S0C6, A0A287BMY7, A0A4X1VWL0, A0A8D1CDG3
    Related
    ENSSSCP00000016726.5, ENSSSCT00000017187.5
    Conserved Domains (1) summary
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  6. XM_005671709.3 → XP_005671766.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    See identical proteins and their annotated locations for XP_005671766.1

    UniProtKB/TrEMBL
    A0A0B8S0C6, A0A287BMY7, A0A4X1VWL0, A0A8D1CDG3
    Conserved Domains (1) summary
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  7. XM_021074707.1 → XP_020930366.1  long-chain-fatty-acid--CoA ligase 1 isoform X2

    UniProtKB/TrEMBL
    A0A480QCC9, A0A4X1VRQ6, A0A8D1CDH9
    Conserved Domains (1) summary
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  8. XM_021074704.1 → XP_020930363.1  long-chain-fatty-acid--CoA ligase 1 isoform X1

    UniProtKB/TrEMBL
    A0A0B8S0C6, A0A287BMY7, A0A4X1VWL0, A0A8D1CDG3
    Conserved Domains (1) summary
    cd05927
    Location:117 → 694
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
Nucleotide Protein Strain
Heading Accession and Version

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