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septin11 septin 11 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 447955, updated on 25-Apr-2024

Summary

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Official Symbol
septin11provided by Xenbase
Official Full Name
septin 11provided by Xenbase
Primary source
Xenbase:XB-GENE-956044
See related
Ensembl:ENSXETG00000006404
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
sept6; sept11
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
15
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (88318987..88433712)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (94598564..94712813)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116412001 Neighboring gene sosondowah ankyrin repeat domain family member B Neighboring gene cyclin I Neighboring gene cyclin G2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
  
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
septin-11

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142898.1 → NP_001136370.1  septin-11

    See identical proteins and their annotated locations for NP_001136370.1

    Status: PROVISIONAL

    Source sequence(s)
    BC161434
    UniProtKB/TrEMBL
    A0A6I8PU15, B1H3L0
    Related
    ENSXETP00000058486.1, ENSXETT00000065123.3
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    88318987..88433712
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031897481.1 → XP_031753341.1  septin-11 isoform X6

    UniProtKB/TrEMBL
    A0A6I8QC18, A0A8J1J9J4
    Related
    ENSXETP00000099924.2, ENSXETT00000103920.2
    Conserved Domains (1) summary
    cd01850
    Location:21 → 289
    CDC_Septin; CDC/Septin GTPase family

  2. XM_031897476.1 → XP_031753336.1  septin-11 isoform X2

    UniProtKB/TrEMBL
    A0A6I8QC18, A0A8J1J9I9
    Related
    ENSXETP00000014014.5, ENSXETT00000014014.5
    Conserved Domains (1) summary
    cd01850
    Location:40 → 308
    CDC_Septin; CDC/Septin GTPase family

  3. XM_031897475.1 → XP_031753335.1  septin-11 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QC18, A0A8J1J8I5
    Conserved Domains (1) summary
    cd01850
    Location:78 → 346
    CDC_Septin; CDC/Septin GTPase family

  4. XM_031897478.1 → XP_031753338.1  septin-11 isoform X3

    UniProtKB/TrEMBL
    A0A6I8STG8, A0A8J1J643
    Related
    ENSXETP00000098051.2, ENSXETT00000068862.2
    Conserved Domains (1) summary
    cd01850
    Location:78 → 346
    CDC_Septin; CDC/Septin GTPase family

  5. XM_031897480.1 → XP_031753340.1  septin-11 isoform X5

    UniProtKB/TrEMBL
    A0A6I8Q7Y6, A0A6I8QE73
    Related
    ENSXETP00000068705.2, ENSXETT00000067035.2
    Conserved Domains (1) summary
    cd01850
    Location:78 → 346
    CDC_Septin; CDC/Septin GTPase family

  6. XM_031897477.1 → XP_031753337.1  septin-11 isoform X3

    UniProtKB/TrEMBL
    A0A6I8STG8, A0A8J1J643
    Conserved Domains (1) summary
    cd01850
    Location:78 → 346
    CDC_Septin; CDC/Septin GTPase family

  7. XM_031897479.1 → XP_031753339.1  septin-11 isoform X4

    UniProtKB/TrEMBL
    A0A6I8PU15, A0A8J1J640
    Conserved Domains (1) summary
    cd01850
    Location:78 → 346
    CDC_Septin; CDC/Septin GTPase family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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