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marchf9.S membrane associated ring-CH-type finger 9 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 443709, updated on 11-Apr-2024

Summary

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Official Symbol
marchf9.S
Official Full Name
membrane associated ring-CH-type finger 9 S homeolog
Primary source
Xenbase:XB-GENE-5813129
Locus tag
XELAEV_18015956mg
See related
EnsemblRapid:ENSXLAG00005033403
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
march9; march9.L; march9.S
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Genomic context

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Location:
chromosome: 2S
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2S NC_054374.1 (133338006..133451803)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2S NC_030727.1 (124327287..124440944)

Chromosome 2S - NC_054374.1Genomic Context describing neighboring genes Neighboring gene endonuclease, poly(U) specific like 2 S homeolog Neighboring gene tetraspanin 31 S homeolog Neighboring gene cytochrome P450 family 27 subfamily B member 1 S homeolog Neighboring gene Ts translation elongation factor, mitochondrial like S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
  
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein ubiquitination IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi stack IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MARCHF9
Names
membrane associated ring-CH-type finger 9 L homeolog
membrane-associated ring finger (C3HC4) 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    133338006..133451803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041584437.1 → XP_041440371.1  E3 ubiquitin-protein ligase MARCHF9

    UniProtKB/TrEMBL
    A0A1L8H9V7, A0A974DK64
    Related
    ENSXLAP00005099741.1, ENSXLAT00005101668.1
    Conserved Domains (1) summary
    cd16811
    Location:98 → 148
    RING_CH-C4HC3_MARCH4_9; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH4, MARCH9, and similar proteins

  2. XM_018250097.2 → XP_018105586.1  E3 ubiquitin-protein ligase MARCHF9

    UniProtKB/TrEMBL
    A0A1L8H9V7, A0A974DK64
    Conserved Domains (1) summary
    cd16811
    Location:98 → 148
    RING_CH-C4HC3_MARCH4_9; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH4, MARCH9, and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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