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psip1b PC4 and SFRS1 interacting protein 1b [ Danio rerio (zebrafish) ]

Gene ID: 407619, updated on 27-Mar-2024

Summary

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Official Symbol
psip1bprovided by ZNC
Official Full Name
PC4 and SFRS1 interacting protein 1bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-3273
See related
Ensembl:ENSDARG00000077405 AllianceGenome:ZFIN:ZDB-GENE-030131-3273
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fc32f04; wu:fc32f04; si:ch211-116m6.3
Summary
Predicted to enable double-stranded DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human PSIP1 (PC4 and SFRS1 interacting protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 23
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (45200289..45225861)
105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (45486969..45512541)

Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein basonuclin-2-like Neighboring gene coiled-coil domain-containing protein 171-like Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene complement factor I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in chromatin remodeling IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PC4 and SFRS1 interacting protein 1b; trichohyalin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007134.7 Reference GRCz11 Primary Assembly

    Range
    45200289..45225861
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470060.1 → XP_021325735.1  trichohyalin isoform X1

    UniProtKB/TrEMBL
    A0A8M9PX56
    Related
    ENSDARP00000010777.8, ENSDART00000004357.8
    Conserved Domains (3) summary
    cd05834
    Location:14 → 93
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    pfam11467
    Location:1440 → 1534
    LEDGF; Lens epithelium-derived growth factor (LEDGF)
    cl26511
    Location:586 → 1321
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_021470061.1 → XP_021325736.1  trichohyalin isoform X2

    UniProtKB/TrEMBL
    A0A8M9PTS2
    Conserved Domains (4) summary
    cd05834
    Location:14 → 93
    HDGF_related; The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, ...
    pfam11467
    Location:1391 → 1485
    LEDGF; Lens epithelium-derived growth factor (LEDGF)
    cl26511
    Location:452 → 1300
    Neuromodulin_N; Gap junction protein N-terminal region
    cl27511
    Location:307 → 556
    Na_Ca_ex; Sodium/calcium exchanger protein
Nucleotide Protein Strain
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