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dnajc7 DnaJ (Hsp40) homolog, subfamily C, member 7 [ Danio rerio (zebrafish) ]

Gene ID: 406579, updated on 27-Mar-2024

Summary

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Official Symbol
dnajc7provided by ZNC
Official Full Name
DnaJ (Hsp40) homolog, subfamily C, member 7provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2483
See related
Ensembl:ENSDARG00000058148 AllianceGenome:ZFIN:ZDB-GENE-040426-2483
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fj58b08; zgc:85806; wu:fj58b08
Summary
Orthologous to human DNAJC7 (DnaJ heat shock protein family (Hsp40) member C7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (17878339..17909143)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (17728602..17759403)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 385C Neighboring gene NFKB inhibitor interacting Ras-like 2 Neighboring gene outer dynein arm docking complex subunit 4 Neighboring gene 2',3'-cyclic nucleotide 3' phosphodiesterase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Development and application of a brain-specific cDNA microarray for effect evaluation of neuro-active pharmaceuticals in zebrafish (Danio rerio). van der Ven K, et al. Comp Biochem Physiol B Biochem Mol Biol, 2005 Aug. PMID 15979371
  2. Sequence and domain conservation of the coelacanth Hsp40 and Hsp90 chaperones suggests conservation of function. Bishop ÖT, et al. J Exp Zool B Mol Dev Evol, 2014 Sep. PMID 24106212
  3. RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. Rösel TD, et al. EMBO J, 2011 May 18. PMID 21468032, Free PMC Article
  4. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  5. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
dnaJ homolog subfamily C member 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213290.1 → NP_998455.1  dnaJ homolog subfamily C member 7

    See identical proteins and their annotated locations for NP_998455.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068391
    UniProtKB/TrEMBL
    Q6NUX7
    Related
    ENSDARP00000156894.1, ENSDART00000180218.1
    Conserved Domains (7) summary
    smart00028
    Location:13 → 46
    TPR; Tetratricopeptide repeats
    COG0484
    Location:365 → 466
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:242 → 269
    TPR; TPR repeat [structural motif]
    pfam00226
    Location:366 → 433
    DnaJ; DnaJ domain
    pfam00515
    Location:279 → 312
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:12 → 77
    TPR_11; TPR repeat
    pfam13431
    Location:35 → 68
    TPR_17; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    17878339..17909143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009299335.3 → XP_009297610.1  dnaJ homolog subfamily C member 7 isoform X1

    UniProtKB/TrEMBL
    A0A0R4IFJ1, A0A8M3B873
    Related
    ENSDARP00000131631.2, ENSDART00000166430.3
    Conserved Domains (7) summary
    smart00028
    Location:57 → 90
    TPR; Tetratricopeptide repeats
    COG0484
    Location:409 → 497
    DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:286 → 313
    TPR; TPR repeat [structural motif]
    pfam00226
    Location:410 → 477
    DnaJ; DnaJ domain
    pfam00515
    Location:323 → 356
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:56 → 121
    TPR_11; TPR repeat
    pfam13431
    Location:79 → 112
    TPR_17; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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