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Cfap97d2 CFAP97 domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 403185, updated on 5-Mar-2024

Summary

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Official Symbol
Cfap97d2provided by MGI
Official Full Name
CFAP97 domain containing 2provided by MGI
Primary source
MGI:MGI:2685952
See related
Ensembl:ENSMUSG00000090336 AllianceGenome:MGI:2685952
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm1106; 4932443I19Rik; A230061C02Rik
Summary
Is expressed in bladder; lung; nasal septum; palatal shelf; and skeleton. Orthologous to human CFAP97D2 (CFAP97 domain containing 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
Orthologs
human all
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Genomic context

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See Cfap97d2 in Genome Data Viewer
Location:
8 A1.1; 8 6.38 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (13755508..13794611)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (13705750..13744599)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53399 Neighboring gene RIKEN cDNA 1700029H14 gene Neighboring gene STARR-seq mESC enhancer starr_20769 Neighboring gene RAS p21 protein activator 3 Neighboring gene STARR-seq mESC enhancer starr_20770 Neighboring gene STARR-positive B cell enhancer ABC_E2857 Neighboring gene predicted gene, 34795 Neighboring gene VISTA enhancer mm1751 Neighboring gene STARR-positive B cell enhancer ABC_E10490 Neighboring gene predicted gene, 46032 Neighboring gene STARR-seq mESC enhancer starr_20774 Neighboring gene STARR-seq mESC enhancer starr_20775 Neighboring gene STARR-positive B cell enhancer mm9_chr8:13753700-13754000 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene CDC16 cell division cycle 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein CFAP97D2
Names
CFAP97 domain-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001101519.1 → NP_001094989.1  uncharacterized protein CFAP97D2

    See identical proteins and their annotated locations for NP_001094989.1

    Status: VALIDATED

    Source sequence(s)
    AK038767
    Consensus CDS
    CCDS52489.1
    UniProtKB/Swiss-Prot
    G3UW36
    Related
    ENSMUSP00000127953.2, ENSMUST00000166277.5
    Conserved Domains (1) summary
    pfam13879
    Location:27 → 98
    KIAA1430; KIAA1430 homolog

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    13755508..13794611
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508821.5 → XP_006508884.1  uncharacterized protein CFAP97D2 isoform X2

    UniProtKB/TrEMBL
    A0A286YE38
    Related
    ENSMUSP00000153486.2, ENSMUST00000214337.2
    Conserved Domains (1) summary
    pfam13879
    Location:27 → 121
    KIAA1430; KIAA1430 homolog

  2. XM_006508820.4 → XP_006508883.1  uncharacterized protein CFAP97D2 isoform X1

    UniProtKB/TrEMBL
    A0A286YE38
    Conserved Domains (1) summary
    pfam13879
    Location:27 → 118
    KIAA1430; KIAA1430 homolog

RNA

  1. XR_001778451.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
G3UW36.1 GenPept UniProtKB/Swiss-Prot:G3UW36

Gene LinkOut

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