vamp4 vesicle-associated membrane protein 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: vamp4provided by ZNC
Official Full Name: vesicle-associated membrane protein 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-040625-92
See related: Ensembl:ENSDARG00000043510 AllianceGenome:ZFIN:ZDB-GENE-040625-92
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:73166; zgc:86855
Summary: Predicted to be involved in Golgi ribbon formation; SNARE complex assembly; and microtubule cytoskeleton organization. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in synaptic vesicle and trans-Golgi network. Is expressed in central nervous system. Orthologous to human VAMP4 (vesicle associated membrane protein 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 20

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	20	NC_007131.7 (14968024..15005119)
105	previous assembly	GRCz10 (GCF_000002035.5)	20	NC_007131.6 (15072037..15109139)

Chromosome 20 - NC_007131.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within Golgi ribbon formation	IEA Inferred from Electronic Annotation more info
involved_in SNARE complex assembly	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of SNARE complex	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in trans-Golgi network	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: vesicle-associated membrane protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200735.2 → NP_957029.2 vesicle-associated membrane protein 4

Status: PROVISIONAL

Source sequence(s)

BC071499

UniProtKB/TrEMBL

A0A8M1PFQ0, F6P4N7

Related

ENSDARP00000063873.6, ENSDART00000063874.7

Conserved Domains (2) summary

cd15869
Location:63 → 129

R-SNARE_VAMP4; SNARE motif of VAMP4

pfam00957
Location:62 → 131

Synaptobrevin; Synaptobrevin