slc25a3a solute carrier family 25 member 3a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc25a3aprovided by ZNC
Official Full Name: solute carrier family 25 member 3aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1673
See related: Ensembl:ENSDARG00000027424 AllianceGenome:ZFIN:ZDB-GENE-040426-1673
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: slc25a3l; zgc:73110
Summary: Predicted to enable inorganic phosphate transmembrane transporter activity. Predicted to be involved in phosphate ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in several structures, including alar plate midbrain region; musculature system; optic vesicle; pronephric duct; and visual system. Orthologous to human SLC25A3 (solute carrier family 25 member 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 4

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (16844970..16853676, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (16855996..16864709, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables phosphate transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables phosphate transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables symporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mitochondrial phosphate ion transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in phosphate ion transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in mitochondrial inner membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrial inner membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3a; solute carrier family 25 member 3a

Names: solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3, like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001328572.1 → NP_001315501.1 solute carrier family 25 member 3a

Status: VALIDATED

Description

Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 both encode the same protein.

Source sequence(s)

BX649476

UniProtKB/TrEMBL

A0A8M1PFP1, Q6PC47

Related

ENSDARP00000140665.1, ENSDART00000164570.2

Conserved Domains (2) summary

PTZ00169
Location:63 → 329

PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional

pfam00153
Location:53 → 144

Mito_carr; Mitochondrial carrier protein
NM_200715.2 → NP_957009.1 solute carrier family 25 member 3a

See identical proteins and their annotated locations for NP_957009.1

Status: VALIDATED

Description

Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein.

Source sequence(s)

BX649476, EH451459, EH478503, EH609753

UniProtKB/TrEMBL

A0A8M1PFP1, Q6PC47

Conserved Domains (2) summary

PTZ00169
Location:63 → 329

PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional

pfam00153
Location:53 → 144

Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007115.7 Reference GRCz11 Primary Assembly

Range

16844970..16853676 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005164728.4 → XP_005164785.1 solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 3a isoform X1

UniProtKB/TrEMBL

A0A8M2BBW5

Related

ENSDARP00000111699.2, ENSDART00000125743.4

Conserved Domains (2) summary

PTZ00169
Location:85 → 351

PTZ00169; ADP/ATP transporter on adenylate translocase; Provisional

pfam00153
Location:75 → 166

Mito_carr; Mitochondrial carrier protein