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ubl7b ubiquitin-like 7b (bone marrow stromal cell-derived) [ Danio rerio (zebrafish) ]

Gene ID: 393331, updated on 27-Mar-2024

Summary

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Official Symbol
ubl7bprovided by ZNC
Official Full Name
ubiquitin-like 7b (bone marrow stromal cell-derived)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1334
See related
Ensembl:ENSDARG00000040286 AllianceGenome:ZFIN:ZDB-GENE-040426-1334
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
ubl7; zgc:64009
Summary
Predicted to enable polyubiquitin modification-dependent protein binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in cytosol. Orthologous to human UBL7 (ubiquitin like 7). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 18
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (50524013..50532549)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (50527504..50535984)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene inhibitory synaptic factor 1 Neighboring gene CD276 molecule Neighboring gene uncharacterized LOC101884348 Neighboring gene ubiquitin-conjugating enzyme E2Q family member 1 Neighboring gene cholinergic receptor, nicotinic, beta 4 (neuronal)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Null cyp1b1 Activity in Zebrafish Leads to Variable Craniofacial Defects Associated with Altered Expression of Extracellular Matrix and Lipid Metabolism Genes. Alexandre-Moreno S, et al. Int J Mol Sci, 2021 Jun 16. PMID 34208498, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC64009

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubiquitin-like 7b (bone marrow stromal cell-derived); ubiquitin-like protein 7b
Names
ubiquitin-like 7
ubl7a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200360.1 → NP_956654.1  ubiquitin-like protein 7b

    See identical proteins and their annotated locations for NP_956654.1

    Status: PROVISIONAL

    Source sequence(s)
    BC053194
    UniProtKB/TrEMBL
    A0A286Y9R0, B2GP34, Q7T3A5
    Related
    ENSDARP00000089161.4, ENSDART00000098390.5
    Conserved Domains (3) summary
    cd01815
    Location:15 → 89
    BMSC_UbP_N; Ubiquitin-like domain of BMSC-UbP
    cd14326
    Location:324 → 361
    UBA_UBL7; UBA domain found in ubiquitin-like protein 7 (UBL7) and similar proteins
    pfam06112
    Location:232 → 300
    Herpes_capsid; Gammaherpesvirus capsid protein

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    50524013..50532549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009293893.3 → XP_009292168.1  ubiquitin-like 7b (bone marrow stromal cell-derived) isoform X1

    See identical proteins and their annotated locations for XP_009292168.1

    UniProtKB/TrEMBL
    A0A8M2BLB6
    Conserved Domains (2) summary
    cd01815
    Location:15 → 89
    BMSC_UbP_N; Ubiquitin-like domain of BMSC-UbP
    pfam06112
    Location:232 → 300
    Herpes_capsid; Gammaherpesvirus capsid protein

  2. XM_005173685.3 → XP_005173742.1  ubiquitin-like 7b (bone marrow stromal cell-derived) isoform X1

    See identical proteins and their annotated locations for XP_005173742.1

    UniProtKB/TrEMBL
    A0A8M2BLB6
    Conserved Domains (2) summary
    cd01815
    Location:15 → 89
    BMSC_UbP_N; Ubiquitin-like domain of BMSC-UbP
    pfam06112
    Location:232 → 300
    Herpes_capsid; Gammaherpesvirus capsid protein

  3. XM_005173686.4 → XP_005173743.1  ubiquitin-like 7b (bone marrow stromal cell-derived) isoform X2

    UniProtKB/TrEMBL
    A0A8M2BKY3
    Conserved Domains (3) summary
    cd01815
    Location:15 → 89
    BMSC_UbP_N; Ubiquitin-like domain of BMSC-UbP
    cd14326
    Location:323 → 360
    UBA_UBL7; UBA domain found in ubiquitin-like protein 7 (UBL7) and similar proteins
    pfam06112
    Location:232 → 300
    Herpes_capsid; Gammaherpesvirus capsid protein
Nucleotide Protein
Heading Accession and Version

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