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atp5f1a.S ATP synthase F1 subunit alpha S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380139, updated on 11-Apr-2024

Summary

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Official Symbol
atp5f1a.S
Official Full Name
ATP synthase F1 subunit alpha S homeolog
Primary source
Xenbase:XB-GENE-17330697
Locus tag
XELAEV_18011128mg
See related
EnsemblRapid:ENSXLAG00005000384
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
an2; mom1; atp5a; atp5a1; coxpd22; atp5a1.S
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Genomic context

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Location:
chromosome: 1S
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (194883178..194895606)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (175048028..175060465)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene arkadia (RNF111) N-terminal like PKA signaling regulator 2N S homeolog Neighboring gene ferredoxin 1-like S homeolog Neighboring gene proline-serine-threonine phosphatase interacting protein 2 S homeolog Neighboring gene sialic acid-binding Ig-like lectin 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC64338

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ADP binding IEA
Inferred from Electronic Annotation
more info
  
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables proton-transporting ATP synthase activity, rotational mechanism IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ATP biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proton motive force-driven ATP synthesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within proton transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of mitochondrial proton-transporting ATP synthase, catalytic core IEA
Inferred from Electronic Annotation
more info
  
part_of proton-transporting ATP synthase complex, catalytic core F(1) IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ATP synthase F1 subunit alpha S homeolog
Names
ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle S homeolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086978.1 → NP_001080447.1  ATP synthase F1 subunit alpha S homeolog

    See identical proteins and their annotated locations for NP_001080447.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054959
    UniProtKB/TrEMBL
    A0A974I2L5, Q7SY94
    Related
    ENSXLAP00005001058.1, ENSXLAT00005001089.1
    Conserved Domains (4) summary
    PRK09281
    Location:49 → 553
    PRK09281; F0F1 ATP synthase subunit alpha; Validated
    cd01132
    Location:137 → 418
    F1_ATPase_alpha; F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to ...
    pfam00306
    Location:427 → 518
    ATP-synt_ab_C; ATP synthase alpha/beta chain, C terminal domain
    pfam02874
    Location:69 → 135
    ATP-synt_ab_N; ATP synthase alpha/beta family, beta-barrel domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    194883178..194895606
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041573223.1 → XP_041429157.1  ATP synthase F1 subunit alpha S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1LHZ9, A0A974I2L5
    Related
    ENSXLAP00005001057.1, ENSXLAT00005001088.1
    Conserved Domains (1) summary
    PRK09281
    Location:49 → 582
    PRK09281; F0F1 ATP synthase subunit alpha; Validated
Nucleotide Protein Strain
Heading Accession and Version

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