nptna neuroplastin a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nptnaprovided by ZNC
Official Full Name: neuroplastin aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030804-7
See related: Ensembl:ENSDARG00000103002 AllianceGenome:ZFIN:ZDB-GENE-030804-7
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sb:cb578; wu:fj19g07; zgc:162565
Summary: Predicted to enable cell-cell adhesion mediator activity. Acts upstream of or within response to steroid hormone. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in nervous system; neural tube; ovary; and trigeminal placode. Orthologous to human NPTN (neuroplastin). [provided by Alliance of Genome Resources, Apr 2022]
Annotation information: Annotation category: partial on reference assembly
Orthologs: all
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Genomic context

Location:: chromosome: 25

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (29318928..29363262, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (28875921..28920255, complement)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fj19g07.x1 (e-PCR)
- UniSTS:198717

fj15a08.y1 (e-PCR)
- UniSTS:198604

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within response to steroid hormone	IEP Inferred from Expression Pattern more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: neuroplastin a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.