cops7a COP9 constitutive photomorphogenic homolog subunit 7A [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cops7aprovided by ZNC
Official Full Name: COP9 constitutive photomorphogenic homolog subunit 7Aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-8680
See related: Ensembl:ENSDARG00000022788 AllianceGenome:ZFIN:ZDB-GENE-030131-8680
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: wu:fa19h06; wu:fa94b04
Summary: Predicted to act upstream of or within COP9 signalosome assembly. Predicted to be located in cytoplasm. Predicted to be part of COP9 signalosome. Orthologous to several human genes including COPS7A (COP9 signalosome subunit 7A). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 16

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (21751922..21777544, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (21947670..21973292, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

fa19h06.s1 (e-PCR)
- UniSTS:202452

fa94b04.x1 (e-PCR)
- UniSTS:189687

fa94b04.x1 (e-PCR)
- UniSTS:189688

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within COP9 signalosome assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of COP9 signalosome	IBA Inferred from Biological aspect of Ancestor more info
part_of COP9 signalosome	IEA Inferred from Electronic Annotation more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: COP9 signalosome complex subunit 7a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001305596.1 → NP_001292525.1 COP9 signalosome complex subunit 7a

Status: VALIDATED

Source sequence(s)

EH435068, EH448205

UniProtKB/TrEMBL

A0A8M1P1C6, F6PBL6

Related

ENSDARP00000029462.5, ENSDART00000039381.6

Conserved Domains (1) summary

smart00753
Location:75 → 164

PAM; PCI/PINT associated module