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rnf17 ring finger protein 17 [ Danio rerio (zebrafish) ]

Gene ID: 334519, updated on 27-Mar-2024

Summary

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Official Symbol
rnf17provided by ZNC
Official Full Name
ring finger protein 17provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6451
See related
Ensembl:ENSDARG00000056387 AllianceGenome:ZFIN:ZDB-GENE-030131-6451
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
TDRD4; im:7147535; wu:fj98c04
Summary
Predicted to enable metal ion binding activity. Is expressed in gut; pharynx; and primordial germ cell. Orthologous to human RNF17 (ring finger protein 17). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
37
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (29548542..29571230)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (29737822..29760484)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene ferredoxin 1 Neighboring gene Rho GTPase activating protein 20 Neighboring gene centromere protein J Neighboring gene mcf.2 cell line derived transforming sequence-like b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Comparative studies on duplicated tdrd7 paralogs in teleosts: Molecular evolution caused neo-functionalization. Wang B, et al. Comp Biochem Physiol Part D Genomics Proteomics, 2019 Jun. PMID 31059868
  2. Tdrd12 Is Essential for Germ Cell Development and Maintenance in Zebrafish. Dai X, et al. Int J Mol Sci, 2017 Jun 7. PMID 28590408, Free PMC Article
  3. Control over the morphology and segregation of Zebrafish germ cell granules during embryonic development. Strasser MJ, et al. BMC Dev Biol, 2008 May 28. PMID 18507824, Free PMC Article
  4. An evolutionary approach to recover genes predominantly expressed in the testes of the zebrafish, chicken and mouse. Fouchécourt S, et al. BMC Evol Biol, 2019 Jul 3. PMID 31269894, Free PMC Article
  5. Early depletion of primordial germ cells in zebrafish promotes testis formation. Tzung KW, et al. Stem Cell Reports, 2015 Jan 13. PMID 25434820, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
RING finger protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    29548542..29571230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021478968.1 → XP_021334643.1  RING finger protein 17

    UniProtKB/TrEMBL
    A0A8M9Q552, F1R3C5, F1R4H5
    Related
    ENSDARP00000116232.2, ENSDART00000132295.4
    Conserved Domains (2) summary
    pfam00567
    Location:633 → 746
    TUDOR; Tudor domain
    cl17238
    Location:8 → 60
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394759.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    153657..176345
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_692362.6 → XP_697454.3  RING finger protein 17

    UniProtKB/TrEMBL
    A0A8M9Q552, F1R3C5, F1R4H5
    Conserved Domains (2) summary
    pfam00567
    Location:633 → 746
    TUDOR; Tudor domain
    cl17238
    Location:8 → 60
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein Strain
Heading Accession and Version

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