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Cdr1os cerebellar degeneration related antigen 1, opposite strand [ Mus musculus (house mouse) ]

Gene ID: 331424, updated on 26-Feb-2024

Summary

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Official Symbol
Cdr1osprovided by MGI
Official Full Name
cerebellar degeneration related antigen 1, opposite strandprovided by MGI
Primary source
MGI:MGI:5637821
See related
Ensembl:ENSMUSG00000071753 AllianceGenome:MGI:5637821
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cdr1as; C230004F18Rik
Summary
Is expressed in several structures, including adipose tissue; adrenal gland; central nervous system; gut; and trigeminal nerve. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 5.1), frontal lobe adult (RPKM 4.2) and 6 other tissues See more
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Genomic context

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Location:
X A6; X 34.19 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (60159984..60247391)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (61116378..61139460)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 14664 Neighboring gene estrogen related receptor, beta pseudogene Neighboring gene cerebellar degeneration related antigen 1 Neighboring gene predicted gene 4988 Neighboring gene STARR-seq mESC enhancer starr_47247 Neighboring gene NudC domain containing 2 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Abundant Neural circRNA Cdr1as Is Not Indispensable for Retina Maintenance. Chen XJ, et al. Front Cell Dev Biol, 2020. PMID 33240875, Free PMC Article
  2. ciRS-7 exonic sequence is embedded in a long non-coding RNA locus. Barrett SP, et al. PLoS Genet, 2017 Dec. PMID 29236709, Free PMC Article
  3. A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain. Kleaveland B, et al. Cell, 2018 Jul 12. PMID 29887379, Free PMC Article
  4. Circular RNAs are a large class of animal RNAs with regulatory potency. Memczak S, et al. Nature, 2013 Mar 21. PMID 23446348
  5. Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function. Piwecka M, et al. Science, 2017 Sep 22. PMID 28798046

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Exosomes From IgE-Stimulated Mast Cells Aggravate Asthma-Mediated Atherosclerosis Through circRNA CDR1as-Mediated Endothelial Cell Dysfunction in Mice.
    Title: Exosomes From IgE-Stimulated Mast Cells Aggravate Asthma-Mediated Atherosclerosis Through circRNA CDR1as-Mediated Endothelial Cell Dysfunction in Mice.
  2. Circular RNA Cdr1as inhibits proliferation and delays injury-induced regeneration of the intestinal epithelium.
    Title: Circular RNA Cdr1as inhibits proliferation and delays injury-induced regeneration of the intestinal epithelium.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_030706.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK082088, AK163488, BB653348
    Related
    ENSMUST00000125930.9

  2. NR_173098.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322656
    Related
    ENSMUST00000232525.2

  3. NR_173099.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322656
    Related
    ENSMUST00000231449.2

  4. NR_173100.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322656
    Related
    ENSMUST00000137153.8

  5. NR_173101.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322656
    Related
    ENSMUST00000144853.9

  6. NR_173102.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322656

  7. NR_173103.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322656
    Related
    ENSMUST00000232283.2

  8. NR_173104.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322656
    Related
    ENSMUST00000140023.8

  9. NR_173105.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BX322656
    Related
    ENSMUST00000232057.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    60159984..60247391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177916.2: Suppressed sequence

    Description
    NM_177916.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

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