acbd6 acyl-CoA binding domain containing 6 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: acbd6provided by ZNC
Official Full Name: acyl-CoA binding domain containing 6provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2810
See related: Ensembl:ENSDARG00000039456 AllianceGenome:ZFIN:ZDB-GENE-030131-2810
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc69g03; wu:fc18d09; wu:fc69g03
Summary: Predicted to enable fatty-acyl-CoA binding activity and lipid binding activity. Predicted to be located in cytoplasm. Orthologous to human ACBD6 (acyl-CoA binding domain containing 6). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 8

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	8	NC_007119.7 (14381272..14441812)
105	previous assembly	GRCz10 (GCF_000002035.5)	8	NC_007119.6 (14343567..14404107)

Chromosome 8 - NC_007119.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc18d09.x1 (e-PCR)
- UniSTS:192861

fc18d09.x1 (e-PCR)
- UniSTS:192862

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables fatty-acyl-CoA binding	IBA Inferred from Biological aspect of Ancestor more info
enables fatty-acyl-CoA binding	IEA Inferred from Electronic Annotation more info
enables lipid binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: acyl-CoA-binding domain-containing protein 6

Names: acyl-Coenzyme A binding domain containing 6

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001025455.1 → NP_001020626.1 acyl-CoA-binding domain-containing protein 6

See identical proteins and their annotated locations for NP_001020626.1

Status: PROVISIONAL

Source sequence(s)

BC097158

UniProtKB/Swiss-Prot

Q4V8X4

Related

ENSDARP00000057641.5, ENSDART00000057642.6

Conserved Domains (4) summary

cd00204
Location:183 → 279

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam00887
Location:61 → 141

ACBP; Acyl CoA binding protein

pfam12796
Location:184 → 273

Ank_2; Ankyrin repeats (3 copies)

sd00045
Location:209 → 240

ANK; ANK repeat [structural motif]