nsa2 NSA2 ribosome biogenesis homolog (S. cerevisiae) [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: nsa2provided by ZNC
Official Full Name: NSA2 ribosome biogenesis homolog (S. cerevisiae)provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-488
See related: Ensembl:ENSDARG00000007708 AllianceGenome:ZFIN:ZDB-GENE-030131-488
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb34b10; zgc:56334; wu:fb34b10
Summary: Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus. Predicted to be part of preribosome, large subunit precursor. Orthologous to human NSA2 (NSA2 ribosome biogenesis factor). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 21

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (3789839..3796480, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (3638418..3645059, complement)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in maturation of 5.8S rRNA	IBA Inferred from Biological aspect of Ancestor more info
involved_in maturation of LSU-rRNA	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within rRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within ribosome biogenesis	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleolus	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of preribosome, large subunit precursor	IBA Inferred from Biological aspect of Ancestor more info
part_of ribonucleoprotein complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ribosome biogenesis protein NSA2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199568.2 → NP_955862.2 ribosome biogenesis protein NSA2 homolog

Status: VALIDATED

Source sequence(s)

CU524608, EH457038, EH531450

UniProtKB/TrEMBL

A0A8M1PE36, F1QDL2

Related

ENSDARP00000003036.8, ENSDART00000021976.9

Conserved Domains (2) summary

cd11381
Location:4 → 260

NSA2; pre-ribosomal protein NSA2 (Nop seven-associated 2)

pfam01201
Location:31 → 259

Ribosomal_S8e; Ribosomal protein S8e