pigq phosphatidylinositol glycan anchor biosynthesis, class Q [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pigqprovided by ZNC
Official Full Name: phosphatidylinositol glycan anchor biosynthesis, class Qprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-9793
See related: Ensembl:ENSDARG00000038097 AllianceGenome:ZFIN:ZDB-GENE-030131-9793
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb359; sb:cb359; zgc:64027; wu:fa03b07
Summary: Predicted to enable phosphatidylinositol N-acetylglucosaminyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in blood; intermediate cell mass of mesoderm; and ventral mesoderm. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 77. Orthologous to human PIGQ (phosphatidylinositol glycan anchor biosynthesis class Q). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 3

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (26792546..26807102, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (26661675..26676231, complement)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables glycosyltransferase activity	IEA Inferred from Electronic Annotation more info
enables phosphatidylinositol N-acetylglucosaminyltransferase activity	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in GPI anchor biosynthetic process	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within GPI anchor biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of circadian sleep/wake cycle	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in endoplasmic reticulum	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: phosphatidylinositol N-acetylglucosaminyltransferase subunit Q

Names: phosphatidylinositol glycan, class Q

NP_955461.1

EC 2.4.1.198

XP_005163963.1

EC 2.4.1.198

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_199429.1 → NP_955461.1 phosphatidylinositol N-acetylglucosaminyltransferase subunit Q

See identical proteins and their annotated locations for NP_955461.1

Status: PROVISIONAL

Source sequence(s)

BC053210

UniProtKB/TrEMBL

Q7T389

Related

ENSDARP00000147368.1, ENSDART00000180648.1

Conserved Domains (1) summary

pfam05024
Location:284 → 452

Gpi1; N-acetylglucosaminyl transferase component (Gpi1)

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007114.7 Reference GRCz11 Primary Assembly

Range

26792546..26807102 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005163906.4 → XP_005163963.1 phosphatidylinositol N-acetylglucosaminyltransferase subunit Q isoform X1

UniProtKB/TrEMBL

A0A8M2BBF0, F1QHT3

Related

ENSDARP00000114962.1, ENSDART00000143710.2

Conserved Domains (1) summary

pfam05024
Location:284 → 452

Gpi1; N-acetylglucosaminyl transferase component (Gpi1)