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Tmem154 transmembrane protein 154 [ Mus musculus (house mouse) ]

Gene ID: 320782, updated on 5-Mar-2024

Summary

Official Symbol
Tmem154provided by MGI
Official Full Name
transmembrane protein 154provided by MGI
Primary source
MGI:MGI:2444725
See related
Ensembl:ENSMUSG00000056498 AllianceGenome:MGI:2444725
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
9930117H01Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM154 (transmembrane protein 154). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in bladder adult (RPKM 13.5), spleen adult (RPKM 4.4) and 10 other tissues See more
Orthologs
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Genomic context

See Tmem154 in Genome Data Viewer
Location:
3 F1; 3 37.7 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (84573499..84611882)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (84666192..84704575)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene tigger transposable element derived 4 Neighboring gene predicted gene, 46836 Neighboring gene STARR-seq mESC enhancer starr_08087 Neighboring gene STARR-seq mESC enhancer starr_08088 Neighboring gene STARR-positive B cell enhancer mm9_chr3:84457727-84458028 Neighboring gene STARR-positive B cell enhancer ABC_E1263 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:84485598-84485953 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:84535918-84536119 Neighboring gene predicted gene, 40079 Neighboring gene STARR-positive B cell enhancer ABC_E2072 Neighboring gene predicted gene, 35486

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177260.2NP_796234.1  transmembrane protein 154 precursor

    See identical proteins and their annotated locations for NP_796234.1

    Status: PROVISIONAL

    Source sequence(s)
    AK081441
    Consensus CDS
    CCDS38467.1
    UniProtKB/Swiss-Prot
    Q3TB17, Q3TCN6, Q3TD45, Q8C4Q9, Q8CB06
    Related
    ENSMUSP00000103310.2, ENSMUST00000107682.2
    Conserved Domains (1) summary
    pfam15102
    Location:24163
    TMEM154; TMEM154 protein family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    84573499..84611882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)