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D130079A08Rik RIKEN cDNA D130079A08 gene [ Mus musculus (house mouse) ]

Gene ID: 320671, updated on 8-Feb-2024

Summary

Official Symbol
D130079A08Rikprovided by MGI
Official Full Name
RIKEN cDNA D130079A08 geneprovided by MGI
Primary source
MGI:MGI:2444500
See related
Ensembl:ENSMUSG00000115424 AllianceGenome:MGI:2444500
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
linc-3a
Summary
Is expressed in nervous system and olfactory epithelium. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

See D130079A08Rik in Genome Data Viewer
Location:
14 E2.3; 14 54.18 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (104525869..104696772, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (104288433..104459336, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35308 Neighboring gene predicted gene, 52151 Neighboring gene predicted gene, 35362 Neighboring gene POU domain, class 4, transcription factor 1 Neighboring gene ORC ubiquitin ligase 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_168067.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC121997, AC151910
    Related
    ENSMUST00000228095.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    104525869..104696772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_177223.2: Suppressed sequence

    Description
    NM_177223.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.