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A530016L24Rik RIKEN cDNA A530016L24 gene [ Mus musculus (house mouse) ]

Gene ID: 319942, updated on 5-Mar-2024

Summary

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Official Symbol
A530016L24Rikprovided by MGI
Official Full Name
RIKEN cDNA A530016L24 geneprovided by MGI
Primary source
MGI:MGI:2443020
See related
Ensembl:ENSMUSG00000043122 AllianceGenome:MGI:2443020
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Nrac
Summary
Located in plasma membrane. Orthologous to human C14orf180 (chromosome 14 open reading frame 180). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in mammary gland adult (RPKM 66.5), subcutaneous fat pad adult (RPKM 63.1) and 4 other tissues See more
Orthologs
human all
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Genomic context

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Location:
12 F1; 12 61.2 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (112455829..112466362)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (112489394..112499928)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A730018C14 gene Neighboring gene Riken cDNA B020018J22 gene Neighboring gene transmembrane protein 179 Neighboring gene STARR-seq mESC enhancer starr_33351 Neighboring gene predicted gene, 53770 Neighboring gene predicted gene, 40584

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Nrac, a novel nutritionally-regulated adipose and cardiac-enriched gene. Zhang R, et al. PLoS One, 2012. PMID 23029450, Free PMC Article
  2. Genomic variants in an inbred mouse model predict mania-like behaviors. Saul MC, et al. PLoS One, 2018. PMID 29768498, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
nutritionally-regulated adipose and cardiac-enriched protein
Names
transmembrane protein C14orf180 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177039.4 → NP_796013.1  nutritionally-regulated adipose and cardiac-enriched protein

    See identical proteins and their annotated locations for NP_796013.1

    Status: VALIDATED

    Source sequence(s)
    AK163065
    Consensus CDS
    CCDS49188.1
    UniProtKB/Swiss-Prot
    Q8BNX7, Q8R0Q1
    UniProtKB/TrEMBL
    A0A0R4J0P8
    Related
    ENSMUSP00000056220.7, ENSMUST00000057465.7
    Conserved Domains (1) summary
    pfam15555
    Location:33 → 165
    DUF4658; Domain of unknown function (DUF4658)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    112455829..112466362
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515980.5 → XP_006516043.1  nutritionally-regulated adipose and cardiac-enriched protein isoform X1

    See identical proteins and their annotated locations for XP_006516043.1

    UniProtKB/Swiss-Prot
    Q8BNX7, Q8R0Q1
    UniProtKB/TrEMBL
    A0A0R4J0P8
    Conserved Domains (1) summary
    pfam15555
    Location:33 → 165
    DUF4658; Domain of unknown function (DUF4658)

  2. XM_006515981.5 → XP_006516044.1  nutritionally-regulated adipose and cardiac-enriched protein isoform X1

    See identical proteins and their annotated locations for XP_006516044.1

    UniProtKB/Swiss-Prot
    Q8BNX7, Q8R0Q1
    UniProtKB/TrEMBL
    A0A0R4J0P8
    Conserved Domains (1) summary
    pfam15555
    Location:33 → 165
    DUF4658; Domain of unknown function (DUF4658)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BNX7.2 GenPept UniProtKB/Swiss-Prot:Q8BNX7

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