copg2 COPI coat complex subunit gamma 2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: copg2provided by ZNC
Official Full Name: COPI coat complex subunit gamma 2provided by ZNC
Primary source: ZFIN:ZDB-GENE-000208-8
See related: Ensembl:ENSDARG00000034823 AllianceGenome:ZFIN:ZDB-GENE-000208-8
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: copg; cb943; fi31b06; wu:fi31b06
Summary: Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to act upstream of or within intracellular protein transport and vesicle-mediated transport. Predicted to be located in Golgi apparatus; cytoplasmic vesicle; and membrane. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including axis; notochord; periderm; polster; and solid lens vesicle. Orthologous to several human genes including COPG2 (COPI coat complex subunit gamma 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (15983609..15996191)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (15984854..15997436)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc97h11.x1 (e-PCR)
- UniSTS:194857

fc02e12.x1 (e-PCR)
- UniSTS:192075

fb58a09.y1 (e-PCR)
- UniSTS:190803

AW175001 (e-PCR)
- UniSTS:205788

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables structural molecule activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info
involved_in intra-Golgi vesicle-mediated transport	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within intracellular protein transport	IEA Inferred from Electronic Annotation more info
involved_in organelle transport along microtubule	IBA Inferred from Biological aspect of Ancestor more info
involved_in protein secretion	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within protein transport	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within vesicle-mediated transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of COPI vesicle coat	IBA Inferred from Biological aspect of Ancestor more info
part_of COPI vesicle coat	IEA Inferred from Electronic Annotation more info
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
is_active_in Golgi membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in cytoplasm	IEA Inferred from Electronic Annotation more info
located_in cytoplasmic vesicle	IEA Inferred from Electronic Annotation more info
is_active_in endoplasmic reticulum	IBA Inferred from Biological aspect of Ancestor more info
is_active_in endoplasmic reticulum-Golgi intermediate compartment	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info
part_of membrane coat	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: coatomer subunit gamma-2

Names: coatomer protein complex, subunit gamma 2; gamma-2-COP; gamma-2-coat protein; gamma-cop; gamma2-cop

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_130994.1 → NP_571069.1 coatomer subunit gamma-2

See identical proteins and their annotated locations for NP_571069.1

Status: PROVISIONAL

Source sequence(s)

AF191561

UniProtKB/Swiss-Prot

Q1L8N9, Q4V9K1, Q7ZVC5, Q9PUE3, Q9PUE4

Related

ENSDARP00000043659.7, ENSDART00000043660.8

Conserved Domains (5) summary

COG5240
Location:7 → 868

SEC21; Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

pfam08752
Location:615 → 758

COP-gamma_platf; Coatomer gamma subunit appendage platform subdomain

pfam11701
Location:325 → 497

UNC45-central; Myosin-binding striated muscle assembly central

pfam16381
Location:760 → 872

Coatomer_g_Cpla; Coatomer subunit gamma-1 C-terminal appendage platform

sd00044
Location:398 → 423

HEAT; HEAT repeat [structural motif]