U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Ankrd44 ankyrin repeat domain 44 [ Rattus norvegicus (Norway rat) ]

Gene ID: 301415, updated on 4-Apr-2024

Summary

Go to the top of the page Help
Official Symbol
Ankrd44provided by RGD
Official Full Name
ankyrin repeat domain 44provided by RGD
Primary source
RGD:1561893
See related
Ensembl:ENSRNOG00000021384 AllianceGenome:RGD:1561893
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1561893
Summary
Orthologous to human ANKRD44 (ankyrin repeat domain 44). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Spleen (RPKM 233.8), Thymus (RPKM 192.5) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
9q31
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (63621193..63921999, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (56126746..56427661, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (61229252..61529532, complement)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene similar to human chromosome 2 open reading frame 66 Neighboring gene post-GPI attachment to proteins inositol deacylase 1 Neighboring gene uncharacterized LOC108351932 Neighboring gene transmembrane protein 258 B Neighboring gene ribosomal protein L11, pseudogene 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191807.5 → NP_001178736.3  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    F1LZH9
    Related
    ENSRNOP00000015432.8, ENSRNOT00000015432.8
    Conserved Domains (5) summary
    cd00204
    Location:134 → 259
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam00023
    Location:272 → 304
    Ank; Ankyrin repeat
    pfam12796
    Location:177 → 269
    Ank_2; Ankyrin repeats (3 copies)
    pfam13637
    Location:532 → 587
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:140 → 170
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    63621193..63921999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017596351.3 → XP_017451840.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B isoform X1

    UniProtKB/TrEMBL
    A0A8I6AGL0
    Related
    ENSRNOP00000091674.1

  2. XM_039083293.2 → XP_038939221.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B isoform X2

    Conserved Domains (5) summary
    PHA02874
    Location:290 → 607
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:86 → 359
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:140 → 170
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:600 → 654
    Ank_4; Ankyrin repeats (many copies)
    pfam12796
    Location:12 → 104
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_039083295.2 → XP_038939223.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B isoform X3

    Conserved Domains (5) summary
    PHA02874
    Location:323 → 625
    PHA02874; ankyrin repeat protein; Provisional
    PHA03095
    Location:86 → 359
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:140 → 170
    ANK; ANK repeat [structural motif]
    pfam00023
    Location:961 → 991
    Ank; Ankyrin repeat
    pfam12796
    Location:622 → 718
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous