U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LINC00494 long intergenic non-protein coding RNA 494 [ Homo sapiens (human) ]

Gene ID: 284749, updated on 10-Oct-2023

Summary

Go to the top of the page Help
Official Symbol
LINC00494provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 494provided by HGNC
Primary source
HGNC:HGNC:27657
See related
Ensembl:ENSG00000235621 AllianceGenome:HGNC:27657
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 3.5), spleen (RPKM 1.9) and 9 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
20q13.13
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (48359911..48370638)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (50128721..50139448)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (46988654..46999381)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46833156-46833688 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46834755-46835286 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr20:46842063-46842887 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:46857183-46857312 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46870479-46870978 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46888828-46889328 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:46893650-46894849 Neighboring gene NANOG hESC enhancer GRCh37_chr20:46895251-46895778 Neighboring gene uncharacterized LOC124904924 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46921157-46921901 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:46923391-46924136 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:46924137-46924880 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46924881-46925625 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46948811-46949389 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18014 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18017 Neighboring gene ReSE screen-validated silencer GRCh37_chr20:46979410-46979659 Neighboring gene uncharacterized LOC105372643 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47034597-47035373 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47054573-47055079 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47083129-47083690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18018 Neighboring gene uncharacterized LOC105372645

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. p53-inducible long non-coding RNA PICART1 mediates cancer cell proliferation and migration. Cao Y, et al. Int J Oncol, 2017 May. PMID 28339031
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

Go to the top of the page Help

Review eQTL and phenotype association data in this region using PheGenI

Variation

Go to the top of the page Help

See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026958.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA400799, AL832259, BC035164, DB034461
    Related
    ENST00000416742.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    48359911..48370638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    50128721..50139448
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials