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Ankrd52 ankyrin repeat domain 52 [ Mus musculus (house mouse) ]

Gene ID: 237615, updated on 5-Mar-2024

Summary

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Official Symbol
Ankrd52provided by MGI
Official Full Name
ankyrin repeat domain 52provided by MGI
Primary source
MGI:MGI:2444029
See related
Ensembl:ENSMUSG00000014498 AllianceGenome:MGI:2444029
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
6430544C07; G431002C21Rik
Summary
Orthologous to human ANKRD52 (ankyrin repeat domain 52). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in thymus adult (RPKM 25.9), ovary adult (RPKM 24.4) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
10 D3; 10 76.54 cM
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (128212993..128229875)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (128377124..128394006)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene citrate synthase Neighboring gene predicted gene, 23182 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:127806017-127806126 Neighboring gene coenzyme Q10A Neighboring gene microRNA 6914 Neighboring gene microRNA 6915 Neighboring gene solute carrier family 39 (metal ion transporter), member 5 Neighboring gene nucleic acid binding protein 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:127846873-127847141 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:127848187-127848374 Neighboring gene STARR-positive B cell enhancer ABC_E6940

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Tagging genes with cassette-exchange sites. Cobellis G, et al. Nucleic Acids Res, 2005 Mar 1. PMID 15741177, Free PMC Article
  2. Characterization of an exchangeable gene trap using pU-17 carrying a stop codon-beta geo cassette. Taniwaki T, et al. Dev Growth Differ, 2005 Apr. PMID 15840001
  3. Exchangeable gene trap using the Cre/mutated lox system. Araki K, et al. Cell Mol Biol (Noisy-le-grand), 1999 Jul. PMID 10512203
  4. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
  5. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C
Names
PP6-ARS-C
serine/threonine-protein phosphatase 6 regulatory subunit ARS-C

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172790.2 → NP_766378.1  serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C

    See identical proteins and their annotated locations for NP_766378.1

    Status: PROVISIONAL

    Source sequence(s)
    AC090489
    Consensus CDS
    CCDS24274.1
    UniProtKB/Swiss-Prot
    Q148Z3, Q8BTI7
    Related
    ENSMUSP00000014642.4, ENSMUST00000014642.10
    Conserved Domains (5) summary
    cd00204
    Location:417 → 570
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    sd00045
    Location:108 → 137
    ANK; ANK repeat [structural motif]
    pfam13637
    Location:791 → 843
    Ank_4; Ankyrin repeats (many copies)
    cl26072
    Location:962 → 1029
    Ank_5; Ankyrin repeats (many copies)
    cl26073
    Location:20 → 317
    Ank_2; Ankyrin repeats (3 copies)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    128212993..128229875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8BTI7.1 GenPept UniProtKB/Swiss-Prot:Q8BTI7

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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