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Fhip1a FHF complex subunit HOOK interacting protein 1A [ Mus musculus (house mouse) ]

Gene ID: 229488, updated on 5-Mar-2024

Summary

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Official Symbol
Fhip1aprovided by MGI
Official Full Name
FHF complex subunit HOOK interacting protein 1Aprovided by MGI
Primary source
MGI:MGI:2444746
See related
Ensembl:ENSMUSG00000051000 AllianceGenome:MGI:2444746
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam160a1; 9930021J17Rik
Summary
Predicted to be involved in protein localization to perinuclear region of cytoplasm. Orthologous to human FHIP1A (FHF complex subunit HOOK interacting protein 1A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in mammary gland adult (RPKM 10.7), heart adult (RPKM 10.2) and 17 other tissues See more
Orthologs
human all
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Genomic context

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Location:
3 F1; 3 37.83 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (85567370..85653516, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (85660063..85785302, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3740 Neighboring gene STARR-positive B cell enhancer ABC_E6064 Neighboring gene predicted gene, 54168 Neighboring gene predicted gene, 46809 Neighboring gene glutamyl-tRNA amidotransferase subunit B Neighboring gene STARR-seq mESC enhancer starr_08111 Neighboring gene predicted gene, 40082 Neighboring gene STARR-seq mESC enhancer starr_08112 Neighboring gene proteasome (prosome, macropain) subunit, alpha type 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_08114 Neighboring gene glycosyltransferase 28 domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Cell-type-specific consequences of Reelin deficiency in the mouse neocortex, hippocampus, and amygdala. Boyle MP, et al. J Comp Neurol, 2011 Aug 1. PMID 21491433
  2. Placentation defects are highly prevalent in embryonic lethal mouse mutants. Perez-Garcia V, et al. Nature, 2018 Mar 22. PMID 29539633, Free PMC Article
  3. Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo. Evsikov AV, et al. Genes Dev, 2006 Oct 1. PMID 17015433, Free PMC Article
  4. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 
  • Endonuclease-mediated (3) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in protein localization to perinuclear region of cytoplasm ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
FHF complex subunit HOOK-interacting protein 1A
Names
family with sequence similarity 160, member A1
protein FAM160A1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172682.3 → NP_766270.2  FHF complex subunit HOOK-interacting protein 1A

    See identical proteins and their annotated locations for NP_766270.2

    Status: VALIDATED

    Source sequence(s)
    AI481830, AK036881, DV651332, DV659303
    Consensus CDS
    CCDS17442.2
    UniProtKB/Swiss-Prot
    Q505K2, Q8BZ23
    Related
    ENSMUSP00000113235.2, ENSMUST00000118408.8
    Conserved Domains (2) summary
    pfam10257
    Location:88 → 411
    RAI16-like; Retinoic acid induced 16-like protein
    pfam11489
    Location:658 → 792
    Aim21; Altered inheritance of mitochondria protein 21

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    85567370..85653516 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q505K2.2 GenPept UniProtKB/Swiss-Prot:Q505K2

Gene LinkOut

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