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Dnaaf9 dynein axonemal assembly factor 9 [ Mus musculus (house mouse) ]

Gene ID: 228602, updated on 30-Apr-2024

Summary

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Official Symbol
Dnaaf9provided by MGI
Official Full Name
dynein axonemal assembly factor 9provided by MGI
Primary source
MGI:MGI:1923029
See related
Ensembl:ENSMUSG00000027309 AllianceGenome:MGI:1923029
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810487F15Rik; 4930402H24Rik
Summary
Orthologous to human DNAAF9 (dynein axonemal assembly factor 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 18.0), whole brain E14.5 (RPKM 16.2) and 28 other tissues See more
Orthologs
human all
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Genomic context

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Location:
2 F1; 2 63.25 cM
Exon count:
39
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (130548120..130682565, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (130706200..130840645, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_05692 Neighboring gene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) Neighboring gene solute carrier family 4, sodium bicarbonate transporter-like, member 11 Neighboring gene STARR-seq mESC enhancer starr_05693 Neighboring gene chaperonin containing Tcp1, subunit 3 (gamma) pseudogene Neighboring gene Ppp1r14c pseudogene Neighboring gene RIKEN cDNA A730017L22 gene Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 11 pseudogene Neighboring gene attractin Neighboring gene STARR-seq mESC enhancer starr_05698 Neighboring gene high mobility group box 1 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
  3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (4) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
dynein axonemal assembly factor 9
Names
uncharacterized protein C20orf194 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001311147.1 → NP_001298076.1  dynein axonemal assembly factor 9 isoform 2

    See identical proteins and their annotated locations for NP_001298076.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate exon in the 5' UTR that results in the use of a downstream start codon compared to variant 1. The encoded isoform (2) has a shorter N-terminus compared to isoform 1.
    Source sequence(s)
    AK133294, AL772162
    Consensus CDS
    CCDS79848.1
    UniProtKB/TrEMBL
    Q3V0A7
    Related
    ENSMUSP00000113481.2, ENSMUST00000119422.8

  2. NM_029432.2 → NP_083708.1  dynein axonemal assembly factor 9 isoform 1

    See identical proteins and their annotated locations for NP_083708.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AK045996, AL772162, BC052447
    Consensus CDS
    CCDS16750.1
    UniProtKB/Swiss-Prot
    Q3UPD4, Q7TT23
    Related
    ENSMUSP00000046992.9, ENSMUST00000044766.15

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    130548120..130682565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239474.3 → XP_011237776.1  dynein axonemal assembly factor 9 isoform X2

    See identical proteins and their annotated locations for XP_011237776.1

    UniProtKB/TrEMBL
    Q3V0A7

  2. XM_011239473.3 → XP_011237775.1  dynein axonemal assembly factor 9 isoform X1

  3. XM_017317759.3 → XP_017173248.1  dynein axonemal assembly factor 9 isoform X3

  4. XM_036161354.1 → XP_036017247.1  dynein axonemal assembly factor 9 isoform X3

  5. XM_036161356.1 → XP_036017249.1  dynein axonemal assembly factor 9 isoform X3

RNA

  1. XR_001782167.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_028367.1: Suppressed sequence

    Description
    NM_028367.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7TT23.2 GenPept UniProtKB/Swiss-Prot:Q7TT23

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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