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Rtl6 retrotransposon Gag like 6 [ Mus musculus (house mouse) ]

Gene ID: 223732, updated on 5-Mar-2024

Summary

Official Symbol
Rtl6provided by MGI
Official Full Name
retrotransposon Gag like 6provided by MGI
Primary source
MGI:MGI:2675858
See related
Ensembl:ENSMUSG00000055745 AllianceGenome:MGI:2675858
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Mar6; Mart6; Ldoc1l
Summary
Is expressed in several structures, including gonad; immune system; lung; nervous system; and sensory organ. Orthologous to human RTL6 (retrotransposon Gag like 6). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

Location:
15 E2; 15 39.88 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (84437599..84442024, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (84553398..84557823, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33966 Neighboring gene STARR-seq mESC enhancer starr_39367 Neighboring gene predicted gene, 34027 Neighboring gene predicted gene, 34095 Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:84407609-84407796 Neighboring gene predicted gene, 34201

Genomic regions, transcripts, and products

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2)  1 citation
  • Endonuclease-mediated (2) 

General gene information

Clone Names

  • MGC73499

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
retrotransposon Gag-like protein 6
Names
gag-like protein
leucine zipper, down-regulated in cancer 1-like
mammalian retrotransposon-derived protein 6
protein LDOC1L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_177630.4NP_808298.2  retrotransposon Gag-like protein 6

    See identical proteins and their annotated locations for NP_808298.2

    Status: VALIDATED

    Source sequence(s)
    AL611986
    Consensus CDS
    CCDS37168.1
    UniProtKB/Swiss-Prot
    Q505G4, Q8BNE4
    Related
    ENSMUSP00000069947.5, ENSMUST00000069476.5
    Conserved Domains (1) summary
    pfam16297
    Location:98177
    DUF4939; Domain of unknown function (DUF4939)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    84437599..84442024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)