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Trp63 transformation related protein 63 [ Mus musculus (house mouse) ]

Gene ID: 22061, updated on 5-Apr-2024

Summary

Official Symbol
Trp63provided by MGI
Official Full Name
transformation related protein 63provided by MGI
Primary source
MGI:MGI:1330810
See related
Ensembl:ENSMUSG00000022510 AllianceGenome:MGI:1330810
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ket; P63; P73l; Tp63; P51/P63; Trp53rp1
Summary
This gene encodes tumor protein p63, a member of the p53 family of transcription factors involved in cellular responses to stress and development. The family members include tumor proteins p53, p63, and p73, which have high sequence similarity to one another. This similarity allows p63 and p73 to transactivate p53-responsive genes causing cell cycle arrest and apoptosis. The family members can interact with each other in many ways, including direct and indirect protein interactions. This results in mutual regulation of target gene promoters. Tumor protein p63 -/- mice have several developmental defects which include the lack of limbs and other tissues, such as teeth and mammary glands, which develop as a result of interactions between mesenchyme and epithelium. Both alternative splicing and the use of alternative promoters result in multiple transcript variants encoding different protein isoforms.[provided by RefSeq, Dec 2009]
Expression
Biased expression in bladder adult (RPKM 13.9), genital fat pad adult (RPKM 5.5) and 5 other tissues See more
Orthologs
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Genomic context

See Trp63 in Genome Data Viewer
Location:
16 B1; 16 17.37 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (25502513..25710842)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (25683763..25892088)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein H2 pseudogene Neighboring gene STARR-seq mESC enhancer starr_40474 Neighboring gene STARR-seq mESC enhancer starr_40475 Neighboring gene STARR-seq mESC enhancer starr_40477 Neighboring gene STARR-seq mESC enhancer starr_40478 Neighboring gene STARR-seq mESC enhancer starr_40479 Neighboring gene UPF0568 protein C14orf166 homolog Neighboring gene predicted gene, 24928 Neighboring gene C15 enhancer in intron of tumor protein p63 gene Neighboring gene STARR-seq mESC enhancer starr_40480 Neighboring gene STARR-seq mESC enhancer starr_40481 Neighboring gene DeltaNp63 promoter of tumor protein p63 Neighboring gene STARR-seq mESC enhancer starr_40482 Neighboring gene C40 intronic enhancer of tumor protein p63 gene Neighboring gene predicted gene 4524 Neighboring gene VISTA enhancer mm1095 Neighboring gene prolyl 3-hydroxylase 2 Neighboring gene VISTA enhancer mm1097 Neighboring gene expressed sequence AU015336

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (26)  1 citation
  • Chemically induced (ENU) (1) 
  • Endonuclease-mediated (6) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC115972

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA-binding transcription factor activity ISO
Inferred from Sequence Orthology
more info
 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
 
enables MDM2/MDM4 family protein binding ISO
Inferred from Sequence Orthology
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables WW domain binding ISO
Inferred from Sequence Orthology
more info
 
enables chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables chromatin binding ISO
Inferred from Sequence Orthology
more info
 
enables damaged DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables double-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables identical protein binding ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables p53 binding ISO
Inferred from Sequence Orthology
more info
 
enables promoter-specific chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein domain specific binding ISO
Inferred from Sequence Orthology
more info
 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in DNA damage response ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of Notch signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within anatomical structure formation involved in morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within animal organ morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within apoptotic process TAS
Traceable Author Statement
more info
PubMed 
acts_upstream_of_or_within cellular senescence IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within chromatin remodeling IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cloacal septation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within cranial skeletal system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within determination of adult lifespan IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within ectoderm and mesoderm interaction IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within embryonic forelimb morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within embryonic hindlimb morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within embryonic limb morphogenesis IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within embryonic limb morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within epidermal cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within epidermal cell division IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within epidermis development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within epithelial cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within epithelial cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within establishment of planar polarity IDA
Inferred from Direct Assay
more info
PubMed 
involved_in establishment of skin barrier IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within female genitalia morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within hair follicle development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within hair follicle morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within keratinocyte differentiation IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of keratinocyte proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within morphogenesis of a polarized epithelium IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within multicellular organism development TAS
Traceable Author Statement
more info
PubMed 
involved_in negative regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cellular senescence ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of intracellular estrogen receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of keratinocyte differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of mesoderm development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within neuron apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within odontogenesis of dentin-containing tooth IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within pattern specification process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within polarized epithelial cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of Notch signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of Notch signaling pathway ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of apoptotic signaling pathway IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of cell cycle G1/S phase transition ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of fibroblast apoptotic process ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within positive regulation of keratinocyte proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in positive regulation of osteoblast differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of somatic stem cell population maintenance IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of stem cell proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within post-anal tail morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within prostate gland development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within prostatic bud formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in protein tetramerization IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within proximal/distal pattern formation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of cysteine-type endopeptidase activity involved in apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of epidermal cell division IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within skeletal system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within skin epidermis development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within skin morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within squamous basal epithelial stem cell differentiation involved in prostate gland acinus development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within stem cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of stem cell proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within stem cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within sympathetic nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of transcription by RNA polymerase II IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
part_of chromatin ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in dendrite ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
PubMed 
part_of protein-containing complex ISO
Inferred from Sequence Orthology
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001127259.1NP_001120731.1  tumor protein 63 isoform a

    See identical proteins and their annotated locations for NP_001120731.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a, also known as TAp63alpha).
    Source sequence(s)
    AF075436, AK138305, BC090649
    Consensus CDS
    CCDS49809.1
    UniProtKB/Swiss-Prot
    O88897, O88898, O88899, O89097, Q8C826, Q9QWY9, Q9QWZ0
    UniProtKB/TrEMBL
    Q5CZX0
    Related
    ENSMUSP00000110965.3, ENSMUST00000115310.9
    Conserved Domains (4) summary
    cd09572
    Location:543607
    SAM_tumor-p63; SAM domain of tumor-p63 proteins
    pfam00870
    Location:163358
    P53; P53 DNA-binding domain
    pfam07710
    Location:392431
    P53_tetramer; P53 tetramerisation motif
    pfam08430
    Location:452535
    Forkhead_N; Forkhead N-terminal region
  2. NM_001127260.1NP_001120732.1  tumor protein 63 isoform b

    See identical proteins and their annotated locations for NP_001120732.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) lacks a coding exon in the 3' region, as compared to variant 1. The resulting isoform (b, also known as TAp63beta) has a shorter and different C-terminus, as compared to isoform a.
    Source sequence(s)
    AF075435, AK138305, BC090649
    Consensus CDS
    CCDS49810.1
    UniProtKB/Swiss-Prot
    O88898
    UniProtKB/TrEMBL
    Q5CZX0
    Related
    ENSMUSP00000067005.6, ENSMUST00000065523.12
    Conserved Domains (2) summary
    cd08367
    Location:177358
    P53; P53 DNA-binding domain
    pfam07710
    Location:392428
    P53_tetramer; P53 tetramerisation motif
  3. NM_001127261.1NP_001120733.1  tumor protein 63 isoform c

    See identical proteins and their annotated locations for NP_001120733.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) lacks an internal 12 nt segment and several 3' exons but has an alternate 3' exon, as compared to variant 1. The resulting isoform (c, also known as TAp63gamma) lacks internal 4 aa and has a shorter and different C-terminus, as compared to isoform a.
    Source sequence(s)
    AF075434, AK138305, AK140023, BC092537
    Consensus CDS
    CCDS49808.1
    UniProtKB/Swiss-Prot
    O88898
    UniProtKB/TrEMBL
    Q569E5
    Related
    ENSMUSP00000110963.3, ENSMUST00000115308.9
    Conserved Domains (2) summary
    cd08367
    Location:177358
    P53; P53 DNA-binding domain
    pfam07710
    Location:388424
    P53_tetramer; P53 tetramerisation motif
  4. NM_001127262.1NP_001120734.1  tumor protein 63 isoform f

    See identical proteins and their annotated locations for NP_001120734.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) is an alternate promoter product; it lacks several 5' exons and an internal exon in the 3' region, but has an alternate 5' exon, as compared to variant 1. The resulting isoform (f, also known as DNp63beta) has shorter and different N- and C-termini, as compared to isoform a.
    Source sequence(s)
    AF075438, AK048623, BC090649
    UniProtKB/Swiss-Prot
    O88898
    UniProtKB/TrEMBL
    Q5CZX0
    Conserved Domains (2) summary
    cd08367
    Location:83264
    P53; P53 DNA-binding domain
    pfam07710
    Location:298334
    P53_tetramer; P53 tetramerisation motif
  5. NM_001127263.1NP_001120735.1  tumor protein 63 isoform g

    See identical proteins and their annotated locations for NP_001120735.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (7) is an alternate promoter product; it lacks several 5' and 3' exons, but has alternate 5' and 3' exons, as compared to variant 1. The resulting isoform (g, also known as DNp63gamma) has shorter and different N- and C-termini, as compared to isoform a.
    Source sequence(s)
    AK140023, BC092537
    Consensus CDS
    CCDS49812.1
    UniProtKB/TrEMBL
    Q569E5
    Related
    ENSMUSP00000110960.2, ENSMUST00000115305.2
    Conserved Domains (2) summary
    cd08367
    Location:83264
    P53; P53 DNA-binding domain
    pfam07710
    Location:298334
    P53_tetramer; P53 tetramerisation motif
  6. NM_001127264.1NP_001120736.1  tumor protein 63 isoform e

    See identical proteins and their annotated locations for NP_001120736.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) is an alternate promoter product; it lacks several 5' exons and an internal 12 nt segment, but has an alternate 5' exon, as compared to variant 1. The resulting isoform (e) has a shorter and different N-terminus, and lacks internal 4 aa, as compared to isoform a.
    Source sequence(s)
    AK048623, AK137253, BC090649
    Consensus CDS
    CCDS49811.1
    UniProtKB/TrEMBL
    Q3UVI3, Q5CZX0
    Related
    ENSMUSP00000110961.2, ENSMUST00000115306.8
    Conserved Domains (3) summary
    cd08367
    Location:83264
    P53; P53 DNA-binding domain
    cd09572
    Location:445509
    SAM_tumor-p63; SAM domain of tumor-p63 proteins
    pfam07710
    Location:294330
    P53_tetramer; P53 tetramerisation motif
  7. NM_001127265.1NP_001120737.1  tumor protein 63 isoform h

    See identical proteins and their annotated locations for NP_001120737.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (8) is an alternate promoter product; it lacks several 5' and 3' exons and an internal 12 nt segment, but has alternate 5' and 3' exons, as compared to variant 1. The resulting isoform (h, also known as DNp63gamma) has shorter and different N- and C-termini, and lacks internal 4 aa, as compared to isoform a.
    Source sequence(s)
    AF075437, AK048623, AK140023, BC092537
    UniProtKB/Swiss-Prot
    O88898
    UniProtKB/TrEMBL
    Q569E5
    Conserved Domains (2) summary
    cd08367
    Location:83264
    P53; P53 DNA-binding domain
    pfam07710
    Location:294330
    P53_tetramer; P53 tetramerisation motif
  8. NM_001427037.1NP_001413966.1  tumor protein 63 isoform i

    Status: REVIEWED

    Source sequence(s)
    AC109213, AC113020
  9. NM_011641.2NP_035771.1  tumor protein 63 isoform d

    See identical proteins and their annotated locations for NP_035771.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) is an alternate promoter product; it lacks several 5' exons but has an alternate 5' exon, as compared to variant 1. The resulting isoform (d, also known as DNp63alpha) has a shorter and different N-terminus, as compared to isoform a.
    Source sequence(s)
    AF075439, AK048623, BC090649
    Consensus CDS
    CCDS28085.1
    UniProtKB/TrEMBL
    Q5CZX0
    Related
    ENSMUSP00000038117.7, ENSMUST00000040231.13
    Conserved Domains (3) summary
    cd08367
    Location:83264
    P53; P53 DNA-binding domain
    cd09572
    Location:449513
    SAM_tumor-p63; SAM domain of tumor-p63 proteins
    pfam07710
    Location:298334
    P53_tetramer; P53 tetramerisation motif

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    25502513..25710842
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522002.1XP_006522065.1  tumor protein 63 isoform X3

    Conserved Domains (2) summary
    cd08367
    Location:177358
    P53; P53 DNA-binding domain
    pfam07710
    Location:392428
    P53_tetramer; P53 tetramerisation motif
  2. XM_006522001.3XP_006522064.1  tumor protein 63 isoform X2

    UniProtKB/TrEMBL
    Q5CZX0
    Conserved Domains (4) summary
    cd08367
    Location:58239
    P53; P53 DNA-binding domain
    cd09572
    Location:424488
    SAM_tumor-p63; SAM domain of tumor-p63 proteins
    pfam07710
    Location:273309
    P53_tetramer; P53 tetramerisation motif
    pfam08430
    Location:338415
    Forkhead_N; Forkhead N-terminal region