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Tff2 trefoil factor 2 (spasmolytic protein 1) [ Mus musculus (house mouse) ]

Gene ID: 21785, updated on 21-Apr-2024

Summary

Official Symbol
Tff2provided by MGI
Official Full Name
trefoil factor 2 (spasmolytic protein 1)provided by MGI
Primary source
MGI:MGI:1306805
See related
Ensembl:ENSMUSG00000024028 AllianceGenome:MGI:1306805
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SP; mSP
Summary
Enables CXCR4 chemokine receptor binding activity. Acts upstream of or within several processes, including negative regulation of gastric acid secretion; negative regulation of macrophage activation; and positive regulation of ERK1 and ERK2 cascade. Located in extracellular space. Is expressed in several structures, including alimentary system; genitourinary system; liver; skeleton; and thymus. Orthologous to human TFF2 (trefoil factor 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in duodenum adult (RPKM 2097.9), stomach adult (RPKM 1770.2) and 1 other tissue See more
Orthologs
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Genomic context

Location:
17 A3.3; 17 15.8 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (31360036..31363256, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (31141062..31144282, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5588 Neighboring gene ATP binding cassette subfamily G member 1 Neighboring gene STARR-seq mESC enhancer starr_42319 Neighboring gene STARR-positive B cell enhancer ABC_E7512 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:31214721-31214922 Neighboring gene trefoil factor 3, intestinal Neighboring gene predicted gene 15318 Neighboring gene trefoil factor 1 Neighboring gene transmembrane protease, serine 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (3)  1 citation
  • Endonuclease-mediated (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables CXCR4 chemokine receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables CXCR4 chemokine receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within calcium-mediated signaling IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of cell population proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in chemokine-mediated signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within chemokine-mediated signaling pathway IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of establishment of localization in cell IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of gastric acid secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of macrophage activation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in maintenance of gastrointestinal epithelium IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in negative regulation of gastric acid secretion IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within negative regulation of gastric acid secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of inflammatory response IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within negative regulation of macrophage activation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of ERK1 and ERK2 cascade IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within positive regulation of cell population proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within positive regulation of cell population proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within regulation of cell migration IGI
Inferred from Genetic Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in extracellular space IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
trefoil factor 2
Names
spasmolytic polypeptide

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009363.3NP_033389.2  trefoil factor 2 precursor

    See identical proteins and their annotated locations for NP_033389.2

    Status: PROVISIONAL

    Source sequence(s)
    AK003093
    Consensus CDS
    CCDS37545.1
    UniProtKB/Swiss-Prot
    O08913, Q03404
    UniProtKB/TrEMBL
    Q9QX97
    Related
    ENSMUSP00000024826.8, ENSMUST00000024826.8
    Conserved Domains (2) summary
    smart00018
    Location:79124
    PD; P or trefoil or TFF domain
    pfam00088
    Location:3672
    Trefoil; Trefoil (P-type) domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    31360036..31363256 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)