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Mgl2 macrophage galactose N-acetyl-galactosamine specific lectin 2 [ Mus musculus (house mouse) ]

Gene ID: 216864, updated on 8-Feb-2024

Summary

Official Symbol
Mgl2provided by MGI
Official Full Name
macrophage galactose N-acetyl-galactosamine specific lectin 2provided by MGI
Primary source
MGI:MGI:2385729
See related
Ensembl:ENSMUSG00000040950 AllianceGenome:MGI:2385729
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
CD301b
Summary
Enables carbohydrate binding activity. Predicted to be active in external side of plasma membrane. Is expressed in ductus deferens; epididymis; ileum; prostate gland; and testis. Orthologous to human CLEC10A (C-type lectin domain containing 10A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in bladder adult (RPKM 12.3), mammary gland adult (RPKM 12.0) and 14 other tissues See more
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Genomic context

Location:
11 B3; 11 42.99 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (70020953..70028368)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (70130125..70137542)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 32946 Neighboring gene asialoglycoprotein receptor 2 Neighboring gene predicted gene 12311 Neighboring gene STARR-seq mESC enhancer starr_29870 Neighboring gene C-type lectin domain family 10, member A Neighboring gene STARR-seq mESC enhancer starr_29871 Neighboring gene solute carrier family 16 (monocarboxylic acid transporters), member 11

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • MGC123660, MGC123939, MGC124077

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables carbohydrate binding IDA
Inferred from Direct Assay
more info
PubMed 
enables fucose binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables mannose binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Process Evidence Code Pubs
involved_in biological process involved in interspecies interaction between organisms IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
macrophage galactose N-acetyl-galactosamine specific lectin 2
Names
macrophage galactose-type C-type lectin 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145137.2NP_660119.1  macrophage galactose N-acetyl-galactosamine specific lectin 2

    See identical proteins and their annotated locations for NP_660119.1

    Status: VALIDATED

    Source sequence(s)
    BC106833, BY198732, BY544307
    Consensus CDS
    CCDS24935.1
    UniProtKB/TrEMBL
    F6QSC4, Q8JZN1
    Related
    ENSMUSP00000048568.6, ENSMUST00000041550.12
    Conserved Domains (2) summary
    cd03590
    Location:189314
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam03954
    Location:38179
    Lectin_N; Hepatic lectin, N-terminal domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    70020953..70028368
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006532912.2XP_006532975.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X1

    See identical proteins and their annotated locations for XP_006532975.1

    UniProtKB/TrEMBL
    A9XX86, F6QSC4
    Related
    ENSMUSP00000131344.2, ENSMUST00000165951.8
    Conserved Domains (2) summary
    cd03590
    Location:190363
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam03954
    Location:39180
    Lectin_N; Hepatic lectin, N-terminal domain
  2. XM_006532913.4XP_006532976.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X2

    See identical proteins and their annotated locations for XP_006532976.1

    UniProtKB/TrEMBL
    F6QSC4
    Related
    ENSMUSP00000104225.2, ENSMUST00000108584.2
    Conserved Domains (2) summary
    cd03590
    Location:189362
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam03954
    Location:38179
    Lectin_N; Hepatic lectin, N-terminal domain
  3. XM_006532915.2XP_006532978.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X5

    See identical proteins and their annotated locations for XP_006532978.1

    UniProtKB/TrEMBL
    F6QSC4
    Conserved Domains (2) summary
    cd03590
    Location:190315
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam03954
    Location:39180
    Lectin_N; Hepatic lectin, N-terminal domain
  4. XM_017314459.1XP_017169948.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X4

    UniProtKB/TrEMBL
    Q8BUD5
    Conserved Domains (2) summary
    cd03590
    Location:159332
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam03954
    Location:2149
    Lectin_N; Hepatic lectin, N-terminal domain
  5. XM_006532914.4XP_006532977.1  macrophage galactose N-acetyl-galactosamine specific lectin 2 isoform X3

    See identical proteins and their annotated locations for XP_006532977.1

    UniProtKB/TrEMBL
    Q8BUD5
    Conserved Domains (2) summary
    cd03590
    Location:160333
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
    pfam03954
    Location:2150
    Lectin_N; Hepatic lectin, N-terminal domain